Variant report

Variant	rs12055843
Chromosome Location	chr6:140025428-140025429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140016247..140019706-chr6:140025179..140028113,3	K562	blood:
2	chr6:139695554..139698630-chr6:140024372..140026784,3	K562	blood:
3	chr6:139694310..139698630-chr6:140024372..140027713,4	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10499213	0.92[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10499214	0.88[ASN][1000 genomes]
rs11962730	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11963532	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11964275	0.88[ASN][1000 genomes]
rs12055436	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12055472	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662206	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12664473	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17069206	0.82[ASN][1000 genomes]
rs17069225	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1891808	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1936210	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1936214	0.88[ASN][1000 genomes]
rs2096283	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2096284	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2154032	0.88[ASN][1000 genomes]
rs2185923	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2327993	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4520026	0.88[ASN][1000 genomes]
rs55764205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55966840	0.88[ASN][1000 genomes]
rs60350063	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs60758082	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60870127	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6570372	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6570373	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570374	0.86[ASN][1000 genomes]
rs6905478	0.88[ASN][1000 genomes]
rs73556090	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73558032	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7743796	0.88[ASN][1000 genomes]
rs7752001	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7752323	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7756866	0.88[ASN][1000 genomes]
rs7769567	0.86[ASN][1000 genomes]
rs7774968	0.88[ASN][1000 genomes]
rs9321752	0.99[ASN][1000 genomes]
rs9373246	0.97[ASN][1000 genomes]
rs9373247	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9373248	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9376452	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9376457	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9385874	0.88[ASN][1000 genomes]
rs9385875	0.88[ASN][1000 genomes]
rs9385876	0.88[ASN][1000 genomes]
rs9389715	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9389717	0.86[ASN][1000 genomes]
rs9399292	0.90[ASN][1000 genomes]
rs9403113	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403114	0.88[ASN][1000 genomes]
rs9403115	0.88[ASN][1000 genomes]
rs9403116	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140022400-140029200	Weak transcription	NHDF-Ad	bronchial
2	chr6:140022600-140028000	Weak transcription	Rectal Mucosa Donor 31	rectum

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