Variant report

Variant	rs55966840
Chromosome Location	chr6:140056993-140056994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140049643..140051966-chr6:140056396..140059312,2	K562	blood:
2	chr6:140055856..140059094-chr6:140083948..140086975,3	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10499213	0.99[ASN][1000 genomes]
rs10499214	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962730	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11963532	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11964275	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965819	0.80[EUR][1000 genomes]
rs12055436	0.88[ASN][1000 genomes]
rs12055472	0.88[ASN][1000 genomes]
rs12055843	0.88[ASN][1000 genomes]
rs12662206	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12664473	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17069225	0.88[ASN][1000 genomes]
rs1936210	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1936214	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096283	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2096284	0.99[ASN][1000 genomes]
rs2154032	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185923	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2327993	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4520026	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4535566	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55764205	0.88[ASN][1000 genomes]
rs60350063	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs60758082	0.88[ASN][1000 genomes]
rs60870127	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6570372	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6570373	0.89[ASN][1000 genomes]
rs6570374	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6901783	0.81[EUR][1000 genomes]
rs6905478	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911905	0.80[EUR][1000 genomes]
rs6933318	0.83[EUR][1000 genomes]
rs73556090	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73558032	0.99[ASN][1000 genomes]
rs73775693	0.80[EUR][1000 genomes]
rs7743796	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752001	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7752323	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7756866	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769567	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7772473	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7774968	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776193	0.80[EUR][1000 genomes]
rs9321752	0.87[ASN][1000 genomes]
rs9373246	0.89[ASN][1000 genomes]
rs9373247	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9373248	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9376457	0.90[ASN][1000 genomes]
rs9385874	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385875	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385876	0.98[ASN][1000 genomes]
rs9389715	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9389717	0.97[ASN][1000 genomes]
rs9403113	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9403114	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403115	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403116	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv464065	chr6:140027836-140085873	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604766	chr6:140027836-140085873	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140054200-140058000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:140054200-140059600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:140054400-140059600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:140054400-140059800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:140054400-140059800	Weak transcription	NHDF-Ad	bronchial
6	chr6:140054800-140072000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:140055000-140057600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:140055000-140064600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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