Variant report

Variant	rs60870127
Chromosome Location	chr6:140019188-140019189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140016247..140019706-chr6:140025179..140028113,3	K562	blood:
2	chr6:140017766..140019321-chr6:140022957..140024761,2	K562	blood:
3	chr6:139694131..139695789-chr6:140016107..140019302,3	K562	blood:
4	chr6:140018170..140021108-chr6:140096378..140098271,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10499214	0.80[ASN][1000 genomes]
rs11964275	0.80[ASN][1000 genomes]
rs12055436	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12055472	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12055843	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17069206	0.90[ASN][1000 genomes]
rs17069225	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1891808	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1936210	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1936214	0.80[ASN][1000 genomes]
rs2154032	0.80[ASN][1000 genomes]
rs2185923	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2327993	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4520026	0.80[ASN][1000 genomes]
rs55764205	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55966840	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs60758082	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6570372	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6570373	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6905478	0.80[ASN][1000 genomes]
rs73556090	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7743796	0.80[ASN][1000 genomes]
rs7752001	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7752323	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7756866	0.80[ASN][1000 genomes]
rs7774968	0.80[ASN][1000 genomes]
rs9321752	0.89[ASN][1000 genomes]
rs9373246	0.87[ASN][1000 genomes]
rs9376452	0.99[ASN][1000 genomes]
rs9376457	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9385874	0.80[ASN][1000 genomes]
rs9385875	0.80[ASN][1000 genomes]
rs9389715	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9399292	0.98[ASN][1000 genomes]
rs9403113	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9403114	0.80[ASN][1000 genomes]
rs9403115	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140015800-140019800	Weak transcription	Liver	Liver
2	chr6:140017000-140019800	Weak transcription	Adipose Nuclei	Adipose
3	chr6:140017200-140019600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:140017600-140020000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:140017800-140019600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:140018600-140019400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:140018600-140019600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
8	chr6:140018800-140019600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:140019000-140019200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:140019000-140019200	Enhancers	Sigmoid Colon	Sigmoid Colon

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