Variant report

Variant	rs9403114
Chromosome Location	chr6:140068841-140068842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139695575..139697248-chr6:140068689..140071855,3	MCF-7	breast:
2	chr6:140067390..140069784-chr6:140078728..140080406,2	K562	blood:
3	chr6:140068204..140070136-chr6:140072502..140075206,2	K562	blood:
4	chr6:140062822..140064897-chr6:140067790..140070616,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10499213	0.99[ASN][1000 genomes]
rs10499214	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962730	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11963532	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11964275	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965819	0.82[AMR][1000 genomes]
rs12055436	0.88[ASN][1000 genomes]
rs12055472	0.88[ASN][1000 genomes]
rs12055843	0.88[ASN][1000 genomes]
rs12662206	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12664473	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17069225	0.88[ASN][1000 genomes]
rs1936210	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1936214	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096283	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2096284	0.99[ASN][1000 genomes]
rs2154032	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185923	0.89[ASN][1000 genomes]
rs2327993	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4520026	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4535566	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55764205	0.88[ASN][1000 genomes]
rs55966840	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60350063	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs60758082	0.88[ASN][1000 genomes]
rs60870127	0.80[ASN][1000 genomes]
rs6570372	0.90[ASN][1000 genomes]
rs6570373	0.89[ASN][1000 genomes]
rs6570374	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6901783	0.81[EUR][1000 genomes]
rs6905478	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911905	0.80[AMR][1000 genomes]
rs6933318	0.81[EUR][1000 genomes]
rs6933569	0.82[AMR][1000 genomes]
rs73556090	0.89[ASN][1000 genomes]
rs73558032	0.99[ASN][1000 genomes]
rs73775693	0.80[AMR][1000 genomes]
rs7743796	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752001	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7752323	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7756866	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769567	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7772473	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7774968	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776193	0.82[AMR][1000 genomes]
rs9321752	0.87[ASN][1000 genomes]
rs9373246	0.89[ASN][1000 genomes]
rs9373247	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9373248	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9376457	0.90[ASN][1000 genomes]
rs9385874	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385876	0.98[ASN][1000 genomes]
rs9389715	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9389717	0.97[ASN][1000 genomes]
rs9403113	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9403115	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403116	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv464065	chr6:140027836-140085873	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604766	chr6:140027836-140085873	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140054800-140072000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:140063800-140069000	Weak transcription	Fetal Heart	heart
3	chr6:140064400-140070000	Enhancers	Fetal Intestine Large	intestine
4	chr6:140064800-140069200	Weak transcription	HSMMtube	muscle
5	chr6:140065400-140069200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:140065400-140069400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:140065400-140069400	Weak transcription	Hela-S3	cervix
8	chr6:140065400-140069600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:140065400-140071800	Weak transcription	HepG2	liver
10	chr6:140065600-140069600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:140065600-140069800	Weak transcription	NHEK	skin
12	chr6:140066000-140073400	Weak transcription	HSMM	muscle
13	chr6:140066200-140069200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:140066200-140072800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:140066400-140069200	Weak transcription	NHLF	lung
16	chr6:140066400-140069600	Weak transcription	NH-A	brain
17	chr6:140066400-140069800	Weak transcription	Fetal Kidney	kidney
18	chr6:140066400-140072200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:140066400-140074800	Weak transcription	A549	lung
20	chr6:140066600-140071800	Weak transcription	NHDF-Ad	bronchial
21	chr6:140066800-140073400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr6:140067400-140069400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:140067600-140069200	Weak transcription	Osteobl	bone
24	chr6:140067800-140070400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr6:140067800-140070600	Enhancers	Fetal Intestine Small	intestine
26	chr6:140068200-140070200	Enhancers	Ovary	ovary
27	chr6:140068200-140070800	Enhancers	Placenta Amnion	Placenta Amnion
28	chr6:140068400-140069600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:140068400-140070200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:140068400-140070200	Enhancers	Placenta	Placenta
31	chr6:140068400-140070200	Enhancers	Right Atrium	heart
32	chr6:140068800-140070400	Enhancers	Adipose Nuclei	Adipose

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