Variant report

Variant	rs11965819
Chromosome Location	chr6:140106951-140106952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10499214	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11964275	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17069373	0.88[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs1936214	0.86[AMR][1000 genomes]
rs2154032	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4520026	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4568471	0.92[ASN][1000 genomes]
rs4896488	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55966840	0.80[EUR][1000 genomes]
rs60052799	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570374	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6901783	0.81[CHB][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6904036	0.92[ASN][1000 genomes]
rs6905478	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6911905	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926194	0.93[ASN][1000 genomes]
rs6933318	0.83[CHB][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6933569	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775693	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743796	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7756866	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7769567	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7772473	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772713	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7774968	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7776193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376463	0.88[ASN][1000 genomes]
rs9376464	0.97[ASN][1000 genomes]
rs9376466	0.93[ASN][1000 genomes]
rs9385874	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9385875	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9385879	0.89[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9389723	0.93[ASN][1000 genomes]
rs9399293	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9403114	0.82[AMR][1000 genomes]
rs9403115	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9403124	0.88[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs9403125	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1022881	chr6:140098646-140172570	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140100200-140109400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:140103200-140109600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:140106600-140107000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr6:140106600-140107000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:140106600-140107000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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