Variant report

Variant	rs2185923
Chromosome Location	chr6:140033527-140033528
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139690703..139692781-chr6:140033196..140035307,2	MCF-7	breast:
2	chr6:140027295..140028995-chr6:140032319..140034577,2	MCF-7	breast:
3	chr6:140033007..140036343-chr6:140037966..140041685,5	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10499213	0.89[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs10499214	0.89[ASN][1000 genomes]
rs11962730	0.88[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs11963532	0.88[ASN][1000 genomes]
rs11964275	0.88[CHB][hapmap];0.88[JPT][hapmap];0.92[YRI][hapmap];0.89[ASN][1000 genomes]
rs12055436	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12055472	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12055843	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12662206	0.89[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs12664473	0.89[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs13216266	0.83[CHB][hapmap]
rs17069206	0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17069225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1891808	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1936210	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1936214	0.89[ASN][1000 genomes]
rs2096283	0.89[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs2096284	0.88[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs2154032	0.88[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs2327993	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4520026	0.89[ASN][1000 genomes]
rs55764205	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55966840	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs60350063	0.88[ASN][1000 genomes]
rs60758082	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60870127	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6570372	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570373	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6570374	0.88[CHB][hapmap];0.88[JPT][hapmap];0.81[YRI][hapmap];0.87[ASN][1000 genomes]
rs6901783	0.81[JPT][hapmap]
rs6905478	0.88[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs6933318	0.81[JPT][hapmap]
rs73556090	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558032	0.88[ASN][1000 genomes]
rs7743796	0.89[ASN][1000 genomes]
rs7752001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752323	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7756866	0.89[ASN][1000 genomes]
rs7769567	0.87[ASN][1000 genomes]
rs7774968	0.89[CHB][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap];0.89[ASN][1000 genomes]
rs9321752	0.98[ASN][1000 genomes]
rs9373246	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9373247	0.89[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs9373248	0.89[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs9376452	0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9376457	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9385874	0.89[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs9385875	0.89[ASN][1000 genomes]
rs9385876	0.83[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs9389715	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9389717	0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs9399292	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9403113	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403114	0.89[ASN][1000 genomes]
rs9403115	0.89[CHB][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap];0.89[ASN][1000 genomes]
rs9403116	0.82[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv464065	chr6:140027836-140085873	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604766	chr6:140027836-140085873	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140028400-140034200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:140028600-140033800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:140029200-140034200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:140030400-140035200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:140030600-140034600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:140030600-140035200	Weak transcription	K562	blood
7	chr6:140030800-140033600	Weak transcription	Fetal Kidney	kidney
8	chr6:140030800-140035000	Weak transcription	Placenta	Placenta
9	chr6:140031000-140033800	Weak transcription	Fetal Intestine Large	intestine
10	chr6:140031200-140034000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:140032400-140035000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:140032600-140033600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:140032600-140034000	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr6:140032600-140034200	Enhancers	Fetal Lung	lung
15	chr6:140032600-140035600	Enhancers	NHEK	skin
16	chr6:140032600-140036000	Enhancers	Hela-S3	cervix
17	chr6:140032800-140034000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:140032800-140034200	Enhancers	Fetal Heart	heart
19	chr6:140032800-140034200	Enhancers	Osteobl	bone
20	chr6:140032800-140034400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:140032800-140035600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:140033000-140034200	Enhancers	NHDF-Ad	bronchial
23	chr6:140033200-140033600	Weak transcription	A549	lung
24	chr6:140033200-140034000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:140033200-140034000	Enhancers	HSMM	muscle
26	chr6:140033200-140035800	Enhancers	HMEC	breast
27	chr6:140033200-140036400	Enhancers	Fetal Intestine Small	intestine
28	chr6:140033400-140034200	Enhancers	Stomach Mucosa	stomach
29	chr6:140033400-140034800	Weak transcription	NHLF	lung

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