Variant report

Variant	rs17069206
Chromosome Location	chr6:140007877-140007878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140006243..140008697-chr6:140010906..140012705,2	K562	blood:
2	chr6:139696578..139698567-chr6:140007188..140008754,2	K562	blood:
3	chr6:139693733..139698007-chr6:140007629..140012473,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10499213	0.88[JPT][hapmap]
rs11962730	0.88[JPT][hapmap]
rs11964275	0.88[JPT][hapmap]
rs12055436	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12055472	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12055843	0.82[ASN][1000 genomes]
rs12662206	0.88[JPT][hapmap]
rs12664473	0.81[JPT][hapmap]
rs17069225	0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1891808	0.89[ASN][1000 genomes]
rs1936210	0.81[ASN][1000 genomes]
rs2096283	0.88[JPT][hapmap]
rs2096284	0.88[JPT][hapmap]
rs2154032	0.88[JPT][hapmap]
rs2185923	0.81[ASN][1000 genomes]
rs2327993	0.81[ASN][1000 genomes]
rs55764205	0.82[ASN][1000 genomes]
rs60758082	0.82[ASN][1000 genomes]
rs60870127	0.90[ASN][1000 genomes]
rs6570372	0.81[ASN][1000 genomes]
rs6570373	0.82[ASN][1000 genomes]
rs6570374	0.88[JPT][hapmap]
rs6901783	0.81[JPT][hapmap]
rs6905478	0.82[JPT][hapmap]
rs6933318	0.81[JPT][hapmap]
rs73556090	0.81[ASN][1000 genomes]
rs7752001	0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7752323	0.81[ASN][1000 genomes]
rs7774968	0.88[JPT][hapmap]
rs9321752	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9373246	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9373247	0.88[JPT][hapmap]
rs9373248	0.86[JPT][hapmap]
rs9376452	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9376457	0.81[ASN][1000 genomes]
rs9385874	0.88[JPT][hapmap]
rs9385876	0.88[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9389715	0.81[ASN][1000 genomes]
rs9389717	0.87[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs9399292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9403115	0.88[JPT][hapmap]
rs9403116	0.87[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140005800-140008800	Weak transcription	Right Atrium	heart
2	chr6:140006000-140009000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:140007200-140008400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:140007400-140008200	Enhancers	K562	blood
5	chr6:140007400-140008800	Enhancers	Adipose Nuclei	Adipose
6	chr6:140007600-140008000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:140007600-140008200	Enhancers	Hela-S3	cervix
8	chr6:140007600-140008200	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr6:140007600-140008800	Enhancers	Fetal Heart	heart
10	chr6:140007800-140008200	Flanking Active TSS	Liver	Liver

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