Variant report

Variant	rs9383916
Chromosome Location	chr6:150207592-150207593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150183161..150188305-chr6:150206346..150214162,9	MCF-7	breast:
2	chr6:150187701..150190612-chr6:150206560..150208609,2	K562	blood:
3	chr6:150182396..150187721-chr6:150207302..150210632,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000268592	Chromatin interaction
ENSG00000120256	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10457853	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17079029	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2342773	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4142628	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6557137	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6557163	0.94[EUR][1000 genomes]
rs6904335	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6905778	0.90[EUR][1000 genomes]
rs6910351	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6915465	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6927913	0.91[EUR][1000 genomes]
rs6936944	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72997594	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7745070	0.91[EUR][1000 genomes]
rs7761734	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322226	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9322227	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9322230	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9322231	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9371216	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9371502	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9371523	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9371539	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9371555	0.90[EUR][1000 genomes]
rs9383569	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9383573	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383583	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9383942	0.89[EUR][1000 genomes]
rs9383943	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9383944	0.91[EUR][1000 genomes]
rs9383945	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9397049	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9397053	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9397056	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9397057	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9397060	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9397071	0.90[EUR][1000 genomes]
rs9397387	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9397394	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9397399	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9397419	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9397447	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9397449	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9397451	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150202800-150208600	Weak transcription	HSMMtube	muscle
2	chr6:150205000-150210400	Enhancers	HMEC	breast
3	chr6:150205600-150207800	Weak transcription	NHDF-Ad	bronchial
4	chr6:150205600-150208200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:150205600-150208400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:150205600-150216000	Weak transcription	Right Atrium	heart
7	chr6:150205800-150208000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:150205800-150208000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:150205800-150208000	Enhancers	NHEK	skin
10	chr6:150205800-150208400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:150205800-150210200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:150205800-150216000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:150206000-150208200	Weak transcription	Esophagus	oesophagus
14	chr6:150206000-150208200	Weak transcription	NHLF	lung
15	chr6:150206000-150208800	Weak transcription	Adipose Nuclei	Adipose
16	chr6:150206000-150216000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:150206200-150208000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:150206600-150211600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:150206800-150208400	Enhancers	Hela-S3	cervix
20	chr6:150207400-150207800	Weak transcription	A549	lung

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