Variant report

Variant	rs7761734
Chromosome Location	chr6:150219326-150219327
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr6:150219266-150219907	HCT-116	colon:	n/a	n/a
2	MAX	chr6:150219202-150219477	Hela-S3	cervix:	n/a	n/a
3	SMC3	chr6:150219307-150219790	Hela-S3	cervix:	n/a	n/a
4	USF1	chr6:150219173-150219529	K562	blood:	n/a	n/a
5	BHLHE40	chr6:150219268-150219725	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150217021..150219534-chr6:150242538..150245487,2	MCF-7	breast:
2	chr6:150183832..150186232-chr6:150215270..150224001,9	MCF-7	breast:

Variant related genes	Relation type
RAET1E	TF binding region
ENSG00000120256	Chromatin interaction
ENSG00000203722	Chromatin interaction
ENSG00000268592	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10457853	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17079029	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2342773	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4142628	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6557137	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6557163	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6904335	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6905778	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6910351	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6915465	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6927913	0.97[EUR][1000 genomes]
rs6936944	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72997594	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7745070	0.97[EUR][1000 genomes]
rs9322226	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9322227	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9322230	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322231	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9371216	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9371523	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9371539	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9371555	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9383569	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9383573	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9383583	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9383916	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9383942	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9383943	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9383944	0.97[EUR][1000 genomes]
rs9383945	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9397049	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9397053	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9397056	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9397057	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9397060	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9397071	0.96[EUR][1000 genomes]
rs9397394	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9397399	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9397419	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9397447	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9397449	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9397451	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150209600-150222200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:150216000-150219400	Enhancers	Lung	lung
3	chr6:150216000-150219400	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr6:150216000-150219400	Flanking Active TSS	Hela-S3	cervix
5	chr6:150216000-150222600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:150216200-150219400	Enhancers	Fetal Intestine Large	intestine
7	chr6:150216200-150219400	Enhancers	Fetal Muscle Trunk	muscle
8	chr6:150216200-150219600	Enhancers	Fetal Muscle Leg	muscle
9	chr6:150216600-150221800	Weak transcription	Pancreas	Pancrea
10	chr6:150216600-150225000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:150217800-150221600	Weak transcription	Gastric	stomach
12	chr6:150218600-150219600	Enhancers	NHDF-Ad	bronchial
13	chr6:150218600-150221600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:150218600-150222600	Enhancers	HMEC	breast
15	chr6:150218800-150219400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:150218800-150219400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr6:150218800-150219400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:150218800-150219400	Enhancers	Brain Anterior Caudate	brain
19	chr6:150218800-150221400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:150218800-150227600	Weak transcription	Fetal Intestine Small	intestine
21	chr6:150219000-150219400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr6:150219000-150219400	Enhancers	Colonic Mucosa	Colon
23	chr6:150219000-150219400	Enhancers	HSMM	muscle
24	chr6:150219000-150219400	Enhancers	Osteobl	bone
25	chr6:150219000-150219600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:150219000-150219600	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr6:150219000-150219600	Enhancers	NHLF	lung
28	chr6:150219000-150219800	Enhancers	Adipose Nuclei	Adipose
29	chr6:150219000-150219800	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr6:150219000-150219800	Bivalent Enhancer	HepG2	liver
31	chr6:150219000-150220000	Enhancers	A549	lung
32	chr6:150219000-150220200	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr6:150219000-150221200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:150219000-150221400	Enhancers	NHEK	skin
35	chr6:150219000-150225800	Weak transcription	Right Atrium	heart
36	chr6:150219200-150219400	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr6:150219200-150219400	Enhancers	Stomach Smooth Muscle	stomach
38	chr6:150219200-150219600	Enhancers	HSMMtube	muscle
39	chr6:150219200-150220200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:150219200-150223000	Enhancers	Esophagus	oesophagus
41	chr6:150219200-150225400	Weak transcription	Psoas Muscle	Psoas
42	chr6:150219200-150226200	Weak transcription	Spleen	Spleen

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