Variant report

Variant	rs10457853
Chromosome Location	chr6:150227327-150227328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150226570..150229723-chr6:150237444..150240125,3	K562	blood:
2	chr6:150225385..150227618-chr6:150231399..150233931,2	MCF-7	breast:
3	chr6:150182462..150186110-chr6:150225717..150228741,3	MCF-7	breast:
4	chr6:150222304..150224162-chr6:150225800..150228066,2	MCF-7	breast:
5	chr6:150195717..150198563-chr6:150225615..150228061,2	K562	blood:

Variant related genes	Relation type
ENSG00000120256	Chromatin interaction
ENSG00000268592	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs17079029	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2342773	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4142628	1.00[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6557137	1.00[CEU][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6557163	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6904335	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6905778	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6910351	1.00[CEU][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6915465	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6927913	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6936944	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72997594	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745070	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7761734	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322226	1.00[CEU][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9322227	1.00[CEU][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9322230	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9322231	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9371216	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9371502	0.81[AMR][1000 genomes]
rs9371523	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9371539	1.00[CEU][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9371555	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383569	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9383573	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9383583	1.00[CEU][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9383916	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9383942	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383944	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9383945	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9397049	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9397053	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9397056	1.00[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9397057	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9397060	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9397071	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9397387	0.81[AMR][1000 genomes]
rs9397394	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9397399	1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9397419	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9397447	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9397449	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9397451	0.93[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150218800-150227600	Weak transcription	Fetal Intestine Small	intestine
2	chr6:150222600-150229800	Weak transcription	Pancreas	Pancrea
3	chr6:150225200-150227400	Enhancers	Fetal Muscle Leg	muscle
4	chr6:150225400-150227600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr6:150225400-150227800	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr6:150226000-150227800	Enhancers	Lung	lung
7	chr6:150226200-150227400	Weak transcription	Right Atrium	heart
8	chr6:150226200-150242000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:150226400-150227600	Enhancers	Left Ventricle	heart
10	chr6:150226400-150227800	Enhancers	Right Ventricle	heart
11	chr6:150226600-150227400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:150226600-150228200	Enhancers	Adipose Nuclei	Adipose
13	chr6:150227000-150227800	Enhancers	Spleen	Spleen
14	chr6:150227200-150227600	Enhancers	Fetal Muscle Trunk	muscle
15	chr6:150227200-150229800	Weak transcription	Esophagus	oesophagus

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