Variant report

Variant	rs9383943
Chromosome Location	chr6:150234924-150234925
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150232168..150236512-chr6:150243000..150246593,4	K562	blood:

Variant related genes	Relation type
ENSG00000203722	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10457853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079029	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2342773	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4142628	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6557137	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6557163	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6904335	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6905778	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6910351	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6915465	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6927913	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6936944	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72997594	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745070	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7761734	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322226	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9322227	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9322230	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9322231	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9371216	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9371502	0.81[AMR][1000 genomes]
rs9371523	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9371539	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9371555	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383569	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9383573	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9383583	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9383916	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9383942	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383944	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9383945	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9397049	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9397053	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9397056	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9397057	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9397060	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9397071	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9397387	0.81[AMR][1000 genomes]
rs9397394	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9397399	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9397419	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9397447	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9397449	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9397451	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150226200-150242000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:150227800-150243400	Weak transcription	Right Ventricle	heart
3	chr6:150230200-150239000	Weak transcription	Esophagus	oesophagus
4	chr6:150230400-150243600	Weak transcription	Pancreas	Pancrea
5	chr6:150231600-150239200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:150234000-150235200	Enhancers	K562	blood
7	chr6:150234200-150235000	Enhancers	Hela-S3	cervix
8	chr6:150234800-150235200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links