Variant report

Variant	rs943346
Chromosome Location	chr10:97254305-97254306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:97254240-97254390	HepG2	liver:	n/a	chr10:97254318-97254331 chr10:97254361-97254368
2	CTCF	chr10:97254300-97254450	HUVEC	blood vessel:	n/a	chr10:97254318-97254331 chr10:97254361-97254368

Variant related genes	Relation type
SORBS1	TF binding region

rs_ID	r²[population]
rs10736090	0.80[EUR][1000 genomes]
rs10786216	0.93[EUR][1000 genomes]
rs12767115	1.00[JPT][hapmap]
rs1326935	0.82[CHB][hapmap];0.85[ASN][1000 genomes]
rs1326936	0.82[CHB][hapmap]
rs1409711	1.00[MEX][hapmap];1.00[MKK][hapmap];0.80[EUR][1000 genomes]
rs1536447	0.82[CHB][hapmap]
rs1571132	0.82[CHB][hapmap]
rs4244315	1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6584002	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97239600-97260800	Weak transcription	Brain Germinal Matrix	brain
2	chr10:97241000-97260600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:97241600-97260400	Weak transcription	Fetal Brain Male	brain
4	chr10:97241600-97260600	Weak transcription	Fetal Stomach	stomach
5	chr10:97241800-97256400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:97242000-97256400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:97242800-97256000	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:97245400-97259200	Weak transcription	Brain Substantia Nigra	brain
9	chr10:97245400-97264600	Weak transcription	Ovary	ovary
10	chr10:97245800-97259400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr10:97246200-97256600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:97246400-97256000	Weak transcription	HSMMtube	muscle
13	chr10:97247400-97259800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:97249400-97261200	Weak transcription	Fetal Brain Female	brain
15	chr10:97249800-97274000	Weak transcription	Spleen	Spleen
16	chr10:97250000-97258800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:97251200-97268200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:97252200-97254400	Enhancers	Right Ventricle	heart
19	chr10:97252200-97254600	Enhancers	Brain Angular Gyrus	brain
20	chr10:97252200-97254600	Enhancers	Gastric	stomach
21	chr10:97252200-97254600	Enhancers	Pancreas	Pancrea
22	chr10:97252200-97255600	Enhancers	Fetal Heart	heart
23	chr10:97252200-97255600	Enhancers	Left Ventricle	heart
24	chr10:97252400-97254400	Enhancers	Right Atrium	heart
25	chr10:97252400-97254400	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr10:97252400-97254600	Enhancers	Psoas Muscle	Psoas
27	chr10:97252400-97254600	Genic enhancers	Stomach Smooth Muscle	stomach
28	chr10:97252400-97255200	Enhancers	K562	blood
29	chr10:97252400-97262000	Weak transcription	Fetal Lung	lung
30	chr10:97252600-97254800	Enhancers	Colon Smooth Muscle	Colon
31	chr10:97252600-97259200	Weak transcription	Liver	Liver
32	chr10:97253000-97254400	Genic enhancers	Fetal Intestine Small	intestine
33	chr10:97253200-97254400	Enhancers	Lung	lung
34	chr10:97253200-97254400	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr10:97253200-97254600	Enhancers	Rectal Smooth Muscle	rectum
36	chr10:97253200-97254800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:97253400-97254400	Enhancers	Duodenum Mucosa	Duodenum
38	chr10:97253400-97254400	Enhancers	HepG2	liver
39	chr10:97253400-97255800	Enhancers	Brain Anterior Caudate	brain
40	chr10:97253400-97261200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr10:97253600-97254400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr10:97253600-97254400	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr10:97253600-97254400	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr10:97253600-97254400	Genic enhancers	Aorta	Aorta
45	chr10:97253600-97254400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:97253600-97256600	Weak transcription	Brain Hippocampus Middle	brain
47	chr10:97253800-97254400	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr10:97253800-97256200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:97253800-97257800	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr10:97253800-97258400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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