Variant report

Variant	rs1536447
Chromosome Location	chr10:97260564-97260565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97258694..97260975-chr10:97320638..97323620,2	K562	blood:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10736089	1.00[CHD][hapmap];0.88[GIH][hapmap];0.86[ASN][1000 genomes]
rs10786216	0.86[ASN][1000 genomes]
rs1326931	0.80[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.86[ASN][1000 genomes]
rs1326933	1.00[CEU][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs1326935	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1326936	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1326937	1.00[CEU][hapmap]
rs1326938	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1326939	0.86[ASN][1000 genomes]
rs1359723	0.89[CEU][hapmap];1.00[CHD][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes]
rs1359724	0.86[ASN][1000 genomes]
rs1409708	1.00[CHD][hapmap]
rs1409715	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1536441	0.80[CEU][hapmap]
rs1571132	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.80[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1609588	1.00[CHD][hapmap];0.95[GIH][hapmap];0.86[ASN][1000 genomes]
rs1819287	0.86[ASN][1000 genomes]
rs1887225	0.80[EUR][1000 genomes]
rs1926817	0.81[EUR][1000 genomes]
rs2031683	0.80[CEU][hapmap];0.86[ASN][1000 genomes]
rs3927490	0.80[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.86[ASN][1000 genomes]
rs4244315	0.95[GIH][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs4457684	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4466758	0.86[ASN][1000 genomes]
rs4498913	1.00[CHD][hapmap];0.88[GIH][hapmap];0.86[ASN][1000 genomes]
rs4592368	1.00[CHD][hapmap];0.88[GIH][hapmap];0.86[ASN][1000 genomes]
rs4617517	0.80[ASN][1000 genomes]
rs4638246	0.86[ASN][1000 genomes]
rs4918942	0.80[CEU][hapmap];0.86[ASN][1000 genomes]
rs4918945	0.80[ASN][1000 genomes]
rs4918946	0.80[CEU][hapmap];0.80[ASN][1000 genomes]
rs579342	0.82[GIH][hapmap]
rs6584002	0.82[CHB][hapmap];0.91[EUR][1000 genomes]
rs6584003	0.80[EUR][1000 genomes]
rs6584005	0.86[ASN][1000 genomes]
rs6584006	1.00[CHD][hapmap];0.88[GIH][hapmap];0.86[ASN][1000 genomes]
rs6584008	0.80[CEU][hapmap];0.80[ASN][1000 genomes]
rs7081926	0.80[CEU][hapmap];0.86[ASN][1000 genomes]
rs7092277	0.80[EUR][1000 genomes]
rs7098378	0.80[EUR][1000 genomes]
rs7098531	0.80[EUR][1000 genomes]
rs7894499	0.81[EUR][1000 genomes]
rs7896622	0.92[EUR][1000 genomes]
rs7904778	0.86[ASN][1000 genomes]
rs7909386	0.80[EUR][1000 genomes]
rs7910345	0.86[ASN][1000 genomes]
rs7912249	1.00[CHD][hapmap];0.88[GIH][hapmap];0.86[ASN][1000 genomes]
rs7915173	0.93[ASN][1000 genomes]
rs7921696	0.86[ASN][1000 genomes]
rs7924227	0.80[ASN][1000 genomes]
rs943339	0.80[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.80[ASN][1000 genomes]
rs943340	0.80[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs943346	0.82[CHB][hapmap]
rs943348	0.80[CEU][hapmap];0.86[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1536447	CRTAC1	cis	cerebellum	SCAN
rs1536447	EXOSC1	cis	parietal	SCAN
rs1536447	SORBS1	cis	cerebellum	SCAN

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97239600-97260800	Weak transcription	Brain Germinal Matrix	brain
2	chr10:97241000-97260600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:97241600-97260600	Weak transcription	Fetal Stomach	stomach
4	chr10:97245400-97264600	Weak transcription	Ovary	ovary
5	chr10:97249400-97261200	Weak transcription	Fetal Brain Female	brain
6	chr10:97249800-97274000	Weak transcription	Spleen	Spleen
7	chr10:97251200-97268200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:97252400-97262000	Weak transcription	Fetal Lung	lung
9	chr10:97253400-97261200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:97254000-97265000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:97254200-97261000	Weak transcription	Stomach Mucosa	stomach
12	chr10:97254400-97260600	Weak transcription	Fetal Intestine Small	intestine
13	chr10:97254400-97261800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr10:97256400-97260800	Enhancers	Colon Smooth Muscle	Colon
15	chr10:97256800-97261400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:97256800-97273200	Weak transcription	HSMM	muscle
17	chr10:97257200-97260600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr10:97257400-97264800	Weak transcription	Placenta	Placenta
19	chr10:97257600-97260600	Weak transcription	Right Atrium	heart
20	chr10:97257600-97261600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr10:97257600-97268000	Weak transcription	HSMMtube	muscle
22	chr10:97258000-97261000	Weak transcription	Fetal Intestine Large	intestine
23	chr10:97258000-97261200	Enhancers	HepG2	liver
24	chr10:97258000-97261600	Weak transcription	Gastric	stomach
25	chr10:97258200-97264600	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr10:97258400-97260600	Weak transcription	K562	blood
27	chr10:97258800-97261000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:97259200-97260600	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr10:97259200-97260600	Enhancers	Rectal Smooth Muscle	rectum
30	chr10:97259200-97260800	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr10:97259200-97260800	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr10:97259200-97261800	Enhancers	Lung	lung
33	chr10:97259200-97263000	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr10:97259200-97267200	Enhancers	Liver	Liver
35	chr10:97259400-97260800	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr10:97259400-97261000	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr10:97259400-97261800	Enhancers	H9 Cell Line	embryonic stem cell
38	chr10:97259400-97262600	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr10:97259400-97266400	Enhancers	Brain Angular Gyrus	brain
40	chr10:97259400-97269600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:97259600-97261800	Enhancers	H1 Cell Line	embryonic stem cell
42	chr10:97259600-97262800	Enhancers	Pancreas	Pancrea
43	chr10:97259600-97265400	Enhancers	Brain Cingulate Gyrus	brain
44	chr10:97259600-97265400	Enhancers	Brain Hippocampus Middle	brain
45	chr10:97259800-97261200	Weak transcription	Brain Substantia Nigra	brain
46	chr10:97259800-97261800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr10:97259800-97262000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr10:97259800-97264200	Enhancers	Psoas Muscle	Psoas
49	chr10:97260000-97260600	Active TSS	Brain Anterior Caudate	brain
50	chr10:97260000-97260600	Active TSS	Duodenum Smooth Muscle	Duodenum

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