Variant report

Variant	rs2031683
Chromosome Location	chr10:97285487-97285488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97280950..97286355-chr10:97287261..97290251,5	K562	blood:
2	chr10:97285392..97287477-chr10:97320564..97322914,2	K562	blood:
3	chr10:97284547..97287564-chr10:97299273..97302569,3	K562	blood:
4	chr10:97204685..97206327-chr10:97285189..97287313,2	K562	blood:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10736089	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10786216	1.00[ASN][1000 genomes]
rs10786220	1.00[YRI][hapmap]
rs10786223	1.00[YRI][hapmap]
rs1326931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326933	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1326936	0.82[CEU][hapmap];0.93[YRI][hapmap]
rs1326937	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1326938	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326939	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1359723	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1359724	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1409708	1.00[JPT][hapmap]
rs1409715	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536441	1.00[CEU][hapmap];0.80[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1536447	0.80[CEU][hapmap];0.86[ASN][1000 genomes]
rs1571132	0.90[CEU][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1609588	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1819287	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1926817	1.00[YRI][hapmap]
rs3927490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4457684	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4466758	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4498913	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4592368	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4617517	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4638246	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4918942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4918946	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6584005	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6584006	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6584008	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7081926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896622	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7904778	1.00[ASN][1000 genomes]
rs7910345	1.00[ASN][1000 genomes]
rs7912249	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7915173	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7921696	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7924227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs943339	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs943340	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs943348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97278000-97294000	Weak transcription	Esophagus	oesophagus
2	chr10:97279200-97285800	Weak transcription	Pancreas	Pancrea
3	chr10:97279200-97290400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr10:97279200-97290400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:97279200-97293200	Weak transcription	Fetal Lung	lung
6	chr10:97279400-97285800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:97279800-97288200	Weak transcription	HepG2	liver
8	chr10:97279800-97290600	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:97280400-97289000	Enhancers	Rectal Smooth Muscle	rectum
10	chr10:97280600-97291000	Enhancers	Colon Smooth Muscle	Colon
11	chr10:97280800-97301400	Enhancers	Fetal Heart	heart
12	chr10:97281000-97285600	Weak transcription	Fetal Intestine Small	intestine
13	chr10:97281600-97285800	Weak transcription	Gastric	stomach
14	chr10:97281600-97289800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:97281600-97296400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:97281800-97295000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
18	chr10:97282400-97288800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr10:97282400-97292000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr10:97282400-97292000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:97282600-97286600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:97282800-97285800	Weak transcription	Aorta	Aorta
23	chr10:97282800-97287400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr10:97282800-97288800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr10:97283000-97292000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr10:97283200-97296400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:97283400-97286000	Weak transcription	Fetal Brain Male	brain
28	chr10:97283400-97287000	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr10:97283600-97286000	Weak transcription	Stomach Mucosa	stomach
30	chr10:97284200-97289000	Weak transcription	Fetal Brain Female	brain
31	chr10:97284200-97289600	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr10:97284400-97285800	Weak transcription	Psoas Muscle	Psoas
33	chr10:97284400-97285800	Weak transcription	K562	blood
34	chr10:97284400-97286600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:97284600-97286000	Enhancers	Brain Anterior Caudate	brain
36	chr10:97284600-97286400	Enhancers	Right Ventricle	heart
37	chr10:97284600-97286800	Enhancers	Liver	Liver
38	chr10:97284600-97288200	Enhancers	Left Ventricle	heart
39	chr10:97284600-97289200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr10:97284800-97286000	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr10:97284800-97286200	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr10:97284800-97286200	Enhancers	Brain Hippocampus Middle	brain
43	chr10:97285000-97285800	Weak transcription	Right Atrium	heart
44	chr10:97285000-97286000	Weak transcription	HSMMtube	muscle
45	chr10:97285000-97289200	Weak transcription	Lung	lung
46	chr10:97285000-97289400	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr10:97285000-97289600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr10:97285000-97290000	Weak transcription	Brain Substantia Nigra	brain
49	chr10:97285200-97285600	Weak transcription	Fetal Stomach	stomach
50	chr10:97285200-97289000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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