Variant report

Variant	rs7915173
Chromosome Location	chr10:97264951-97264952
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97262883..97265174-chr10:97289179..97291481,2	K562	blood:
2	chr10:97234291..97235881-chr10:97262986..97265815,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10736089	0.93[ASN][1000 genomes]
rs10786216	0.93[ASN][1000 genomes]
rs1326931	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1326933	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1326936	0.81[ASN][1000 genomes]
rs1326938	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1326939	0.93[ASN][1000 genomes]
rs1359724	0.93[ASN][1000 genomes]
rs1409715	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1536441	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1536447	0.93[ASN][1000 genomes]
rs1571132	1.00[ASN][1000 genomes]
rs1609588	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1819287	0.93[ASN][1000 genomes]
rs2031683	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3927490	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4457684	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4466758	0.93[ASN][1000 genomes]
rs4498913	0.93[ASN][1000 genomes]
rs4592368	0.93[ASN][1000 genomes]
rs4617517	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4638246	0.93[ASN][1000 genomes]
rs4918942	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4918945	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4918946	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6584005	0.93[ASN][1000 genomes]
rs6584006	0.93[ASN][1000 genomes]
rs6584008	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7081926	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7896622	0.82[EUR][1000 genomes]
rs7904778	0.93[ASN][1000 genomes]
rs7910345	0.93[ASN][1000 genomes]
rs7912249	0.93[ASN][1000 genomes]
rs7921696	0.93[ASN][1000 genomes]
rs7924227	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs943339	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs943340	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs943348	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97249800-97274000	Weak transcription	Spleen	Spleen
2	chr10:97251200-97268200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:97254000-97265000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:97256800-97273200	Weak transcription	HSMM	muscle
5	chr10:97257600-97268000	Weak transcription	HSMMtube	muscle
6	chr10:97259200-97267200	Enhancers	Liver	Liver
7	chr10:97259400-97266400	Enhancers	Brain Angular Gyrus	brain
8	chr10:97259400-97269600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:97259600-97265400	Enhancers	Brain Cingulate Gyrus	brain
10	chr10:97259600-97265400	Enhancers	Brain Hippocampus Middle	brain
11	chr10:97260000-97265400	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr10:97260000-97269000	Enhancers	Left Ventricle	heart
13	chr10:97260000-97272800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:97260000-97278400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:97260400-97268200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:97260600-97265000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:97260600-97265400	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr10:97260600-97266200	Enhancers	Right Atrium	heart
19	chr10:97260800-97268000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:97260800-97269400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr10:97260800-97272800	Weak transcription	Esophagus	oesophagus
22	chr10:97261000-97266600	Enhancers	Stomach Mucosa	stomach
23	chr10:97261000-97268000	Enhancers	Fetal Heart	heart
24	chr10:97261200-97268000	Enhancers	Rectal Smooth Muscle	rectum
25	chr10:97261200-97268600	Enhancers	Colon Smooth Muscle	Colon
26	chr10:97261400-97265000	Enhancers	Aorta	Aorta
27	chr10:97261600-97265200	Enhancers	Gastric	stomach
28	chr10:97261800-97265000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr10:97261800-97266200	Enhancers	Brain Anterior Caudate	brain
30	chr10:97261800-97268400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr10:97261800-97271200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr10:97262000-97271800	Weak transcription	HMEC	breast
33	chr10:97262400-97265000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr10:97262400-97268200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:97262400-97271000	Weak transcription	Lung	lung
36	chr10:97262400-97275000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr10:97262400-97278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr10:97262800-97265000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr10:97262800-97265000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr10:97262800-97265000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:97262800-97268200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr10:97263000-97265400	Weak transcription	Fetal Brain Female	brain
43	chr10:97263000-97268200	Weak transcription	Fetal Lung	lung
44	chr10:97263200-97265000	Weak transcription	Brain Germinal Matrix	brain
45	chr10:97263200-97266200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr10:97263200-97268200	Weak transcription	Adipose Nuclei	Adipose
47	chr10:97263800-97265800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:97264000-97265200	Enhancers	Pancreas	Pancrea
49	chr10:97264000-97265600	Enhancers	Fetal Stomach	stomach
50	chr10:97264000-97266200	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links