Variant report

Variant	rs1409715
Chromosome Location	chr10:97268219-97268220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10736089	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10786216	1.00[ASN][1000 genomes]
rs10786220	1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs10786223	1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs10786224	0.81[EUR][1000 genomes]
rs1326931	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1326936	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1326937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1326938	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326939	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1359723	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1359724	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1409708	1.00[JPT][hapmap]
rs1536441	0.82[CEU][hapmap]
rs1536447	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1571132	0.89[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1609588	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1819287	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1887225	0.87[EUR][1000 genomes]
rs1926817	1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs2031683	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3927490	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4244315	0.83[EUR][1000 genomes]
rs4457684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4466758	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4498913	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4592368	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4617517	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4638246	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4918942	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918945	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4918946	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6584002	0.86[EUR][1000 genomes]
rs6584005	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6584006	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6584008	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7081926	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092277	0.87[EUR][1000 genomes]
rs7098378	0.87[EUR][1000 genomes]
rs7098531	0.87[EUR][1000 genomes]
rs7894499	0.88[EUR][1000 genomes]
rs7896622	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7904778	1.00[ASN][1000 genomes]
rs7909386	0.87[EUR][1000 genomes]
rs7910345	1.00[ASN][1000 genomes]
rs7912249	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7915173	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7921696	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7924227	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs943339	0.80[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs943340	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs943348	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97249800-97274000	Weak transcription	Spleen	Spleen
2	chr10:97256800-97273200	Weak transcription	HSMM	muscle
3	chr10:97259400-97269600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:97260000-97269000	Enhancers	Left Ventricle	heart
5	chr10:97260000-97272800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:97260000-97278400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:97260800-97269400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr10:97260800-97272800	Weak transcription	Esophagus	oesophagus
9	chr10:97261200-97268600	Enhancers	Colon Smooth Muscle	Colon
10	chr10:97261800-97268400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:97261800-97271200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:97262000-97271800	Weak transcription	HMEC	breast
13	chr10:97262400-97271000	Weak transcription	Lung	lung
14	chr10:97262400-97275000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr10:97262400-97278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr10:97265200-97268400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:97265200-97268400	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:97265200-97268600	Weak transcription	Pancreas	Pancrea
19	chr10:97265200-97268800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:97265200-97271000	Weak transcription	Right Ventricle	heart
21	chr10:97265200-97272000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:97265400-97270800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr10:97265600-97268400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:97266200-97268400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:97266400-97268600	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:97266400-97271000	Weak transcription	Brain Angular Gyrus	brain
27	chr10:97266400-97272200	Weak transcription	Fetal Brain Male	brain
28	chr10:97266400-97272800	Weak transcription	Fetal Brain Female	brain
29	chr10:97266400-97273600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr10:97266800-97268600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:97267200-97268400	Weak transcription	Psoas Muscle	Psoas
32	chr10:97267200-97271000	Weak transcription	Gastric	stomach
33	chr10:97267600-97275000	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr10:97267800-97268800	Enhancers	Aorta	Aorta
35	chr10:97267800-97269000	Enhancers	Small Intestine	intestine
36	chr10:97267800-97269400	Enhancers	Fetal Intestine Large	intestine
37	chr10:97267800-97269400	Enhancers	Fetal Intestine Small	intestine
38	chr10:97268000-97268400	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr10:97268000-97268400	Flanking Active TSS	Rectal Smooth Muscle	rectum
40	chr10:97268000-97268400	Enhancers	HUVEC	blood vessel
41	chr10:97268000-97268400	Enhancers	K562	blood
42	chr10:97268000-97268600	Enhancers	Right Atrium	heart
43	chr10:97268000-97268800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:97268000-97268800	Flanking Active TSS	Fetal Heart	heart
45	chr10:97268000-97269000	Enhancers	Ovary	ovary
46	chr10:97268000-97269000	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr10:97268000-97269000	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr10:97268000-97269000	Enhancers	HSMMtube	muscle
49	chr10:97268000-97269200	Enhancers	Brain Anterior Caudate	brain
50	chr10:97268000-97269200	Enhancers	Stomach Mucosa	stomach

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