Variant report

Variant	rs7098531
Chromosome Location	chr10:97308571-97308572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97307694..97310147-chr10:97311672..97314430,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10786220	0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10786223	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10786224	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326933	0.88[EUR][1000 genomes]
rs1326938	0.87[EUR][1000 genomes]
rs1359723	0.80[CEU][hapmap];0.92[EUR][1000 genomes]
rs1409715	0.87[EUR][1000 genomes]
rs1536447	0.80[EUR][1000 genomes]
rs1887225	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1887227	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1926817	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4457684	0.87[EUR][1000 genomes]
rs7092277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894499	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7896622	0.88[EUR][1000 genomes]
rs7909386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv552022	chr10:97308114-97328227	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97289200-97309000	Enhancers	Left Ventricle	heart
2	chr10:97291800-97308600	Enhancers	Colon Smooth Muscle	Colon
3	chr10:97296400-97311400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr10:97296800-97312600	Weak transcription	Placenta	Placenta
5	chr10:97300400-97308800	Enhancers	Psoas Muscle	Psoas
6	chr10:97301000-97315200	Enhancers	HepG2	liver
7	chr10:97301800-97311000	Weak transcription	Colonic Mucosa	Colon
8	chr10:97303000-97309600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:97304200-97309600	Weak transcription	Fetal Lung	lung
10	chr10:97304200-97310000	Weak transcription	Ovary	ovary
11	chr10:97304200-97310800	Enhancers	Rectal Smooth Muscle	rectum
12	chr10:97304600-97312400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:97304800-97310200	Weak transcription	Fetal Brain Male	brain
14	chr10:97305000-97311200	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr10:97305000-97311400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr10:97305200-97318600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:97305200-97319000	Weak transcription	HSMM	muscle
18	chr10:97305600-97309800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:97305800-97308600	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:97305800-97309600	Weak transcription	K562	blood
21	chr10:97306000-97309600	Weak transcription	Fetal Brain Female	brain
22	chr10:97306000-97310000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr10:97306200-97309000	Enhancers	Right Atrium	heart
24	chr10:97306200-97309200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:97306400-97308600	Weak transcription	Liver	Liver
26	chr10:97306600-97311600	Enhancers	Fetal Heart	heart
27	chr10:97306600-97312200	Weak transcription	Fetal Intestine Small	intestine
28	chr10:97306800-97311400	Enhancers	Right Ventricle	heart
29	chr10:97306800-97313000	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr10:97307000-97309000	Enhancers	Brain Substantia Nigra	brain
31	chr10:97307000-97309600	Enhancers	Aorta	Aorta
32	chr10:97307000-97309600	Weak transcription	Brain Anterior Caudate	brain
33	chr10:97307000-97310400	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr10:97307200-97309400	Weak transcription	Brain Angular Gyrus	brain
35	chr10:97307200-97309600	Weak transcription	Pancreas	Pancrea
36	chr10:97307200-97309800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:97307200-97310000	Weak transcription	Lung	lung
38	chr10:97307200-97310600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr10:97307400-97308600	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr10:97307400-97309400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr10:97307400-97310800	Weak transcription	Esophagus	oesophagus
42	chr10:97307800-97309800	Weak transcription	Gastric	stomach
43	chr10:97307800-97310000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:97307800-97310800	Weak transcription	Fetal Intestine Large	intestine
45	chr10:97308000-97308600	Enhancers	Stomach Smooth Muscle	stomach
46	chr10:97308000-97309200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr10:97308000-97309600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr10:97308000-97309600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr10:97308000-97310000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr10:97308000-97311000	Enhancers	Fetal Stomach	stomach

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