Variant report

Variant	rs7092277
Chromosome Location	chr10:97312505-97312506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97305912..97308530-chr10:97311525..97313348,3	K562	blood:
2	chr10:97308793..97313420-chr10:97319109..97323255,4	K562	blood:
3	chr10:97311021..97313047-chr10:97319994..97322763,2	K562	blood:
4	chr10:97307694..97310147-chr10:97311672..97314430,2	K562	blood:
5	chr10:97302505..97305579-chr10:97311139..97314608,3	K562	blood:
6	chr10:97301380..97303820-chr10:97311084..97312595,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10786220	0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10786223	0.91[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10786224	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326933	0.87[TSI][hapmap];0.88[EUR][1000 genomes]
rs1326938	0.87[EUR][1000 genomes]
rs1359723	0.81[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs1409711	1.00[ASW][hapmap];1.00[CHD][hapmap]
rs1409715	0.87[EUR][1000 genomes]
rs1536447	0.80[EUR][1000 genomes]
rs1571132	0.82[TSI][hapmap]
rs1887225	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1887227	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1926817	1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4457684	0.87[EUR][1000 genomes]
rs7098378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894499	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7896622	0.88[EUR][1000 genomes]
rs7909386	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv552022	chr10:97308114-97328227	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7092277	SORBS1	cis	cerebellum	SCAN
rs7092277	EXOSC1	cis	cerebellum	SCAN
rs7092277	CRTAC1	cis	cerebellum	SCAN
rs7092277	TM9SF3	cis	parietal	SCAN

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97296800-97312600	Weak transcription	Placenta	Placenta
2	chr10:97301000-97315200	Enhancers	HepG2	liver
3	chr10:97305200-97318600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:97305200-97319000	Weak transcription	HSMM	muscle
5	chr10:97306800-97313000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr10:97308000-97318600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:97309400-97312600	Enhancers	Right Atrium	heart
8	chr10:97309400-97313000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr10:97309600-97312600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr10:97309600-97312800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr10:97309600-97313000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr10:97309600-97313000	Enhancers	Psoas Muscle	Psoas
13	chr10:97309600-97313800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:97310400-97318400	Weak transcription	Fetal Kidney	kidney
15	chr10:97310800-97312600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:97310800-97312800	Weak transcription	Lung	lung
17	chr10:97310800-97313600	Enhancers	Colon Smooth Muscle	Colon
18	chr10:97310800-97316800	Weak transcription	Ovary	ovary
19	chr10:97310800-97317800	Weak transcription	Pancreas	Pancrea
20	chr10:97311000-97312600	Weak transcription	Spleen	Spleen
21	chr10:97311000-97312800	Weak transcription	Fetal Stomach	stomach
22	chr10:97311000-97313400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr10:97311000-97314800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:97311000-97316800	Weak transcription	Gastric	stomach
25	chr10:97311000-97318600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:97311200-97313200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr10:97311200-97314600	Weak transcription	Fetal Brain Male	brain
28	chr10:97311200-97315000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr10:97311200-97315000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr10:97311200-97317000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:97311400-97312600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr10:97311400-97312800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr10:97311400-97312800	Weak transcription	Fetal Muscle Leg	muscle
34	chr10:97311400-97313200	Weak transcription	Fetal Brain Female	brain
35	chr10:97311400-97313200	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr10:97311400-97313400	Weak transcription	K562	blood
37	chr10:97311400-97313600	Enhancers	A549	lung
38	chr10:97311400-97313800	Enhancers	Rectal Smooth Muscle	rectum
39	chr10:97311400-97315000	Weak transcription	Brain Hippocampus Middle	brain
40	chr10:97311400-97315400	Weak transcription	Right Ventricle	heart
41	chr10:97311400-97315600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr10:97311400-97316800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr10:97311400-97316800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr10:97311400-97316800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr10:97311400-97317000	Weak transcription	Brain Angular Gyrus	brain
46	chr10:97311400-97317200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr10:97311400-97318400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr10:97311600-97314200	Weak transcription	Liver	Liver
49	chr10:97311600-97315000	Weak transcription	Fetal Heart	heart
50	chr10:97311600-97315400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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