Variant report

Variant	rs1887227
Chromosome Location	chr10:97314830-97314831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97314309..97316972-chr10:97319111..97320746,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10736090	1.00[ASN][1000 genomes]
rs10786220	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786223	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786224	0.84[EUR][1000 genomes]
rs1326933	0.80[EUR][1000 genomes]
rs1359723	0.85[EUR][1000 genomes]
rs1409711	1.00[ASN][1000 genomes]
rs1887225	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1926817	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092277	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7098378	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7098531	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7894499	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7896622	0.80[EUR][1000 genomes]
rs7909386	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv552022	chr10:97308114-97328227	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97301000-97315200	Enhancers	HepG2	liver
2	chr10:97305200-97318600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:97305200-97319000	Weak transcription	HSMM	muscle
4	chr10:97308000-97318600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:97310400-97318400	Weak transcription	Fetal Kidney	kidney
6	chr10:97310800-97316800	Weak transcription	Ovary	ovary
7	chr10:97310800-97317800	Weak transcription	Pancreas	Pancrea
8	chr10:97311000-97316800	Weak transcription	Gastric	stomach
9	chr10:97311000-97318600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:97311200-97315000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:97311200-97315000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:97311200-97317000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:97311400-97315000	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:97311400-97315400	Weak transcription	Right Ventricle	heart
15	chr10:97311400-97315600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:97311400-97316800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:97311400-97316800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr10:97311400-97316800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:97311400-97317000	Weak transcription	Brain Angular Gyrus	brain
20	chr10:97311400-97317200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:97311400-97318400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr10:97311600-97315000	Weak transcription	Fetal Heart	heart
23	chr10:97311600-97315400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:97311600-97317400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr10:97312600-97315000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr10:97312600-97315000	Weak transcription	Right Atrium	heart
27	chr10:97312600-97317000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr10:97312800-97315000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr10:97313000-97315000	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr10:97313000-97315000	Weak transcription	Psoas Muscle	Psoas
31	chr10:97313000-97316800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:97313000-97316800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr10:97313000-97317200	Weak transcription	Spleen	Spleen
34	chr10:97313000-97318600	Weak transcription	Stomach Mucosa	stomach
35	chr10:97313400-97315000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:97313400-97315200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr10:97313400-97316800	Weak transcription	Fetal Brain Female	brain
38	chr10:97313400-97316800	Weak transcription	Fetal Muscle Leg	muscle
39	chr10:97313400-97317800	Weak transcription	Lung	lung
40	chr10:97313400-97318200	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr10:97313600-97315000	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr10:97313600-97315000	Weak transcription	Colon Smooth Muscle	Colon
43	chr10:97313600-97317000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr10:97313800-97315000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:97313800-97315000	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr10:97313800-97316800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:97313800-97316800	Weak transcription	K562	blood
48	chr10:97313800-97317200	Weak transcription	Fetal Intestine Small	intestine
49	chr10:97313800-97318400	Weak transcription	Placenta	Placenta
50	chr10:97314000-97317600	Weak transcription	Fetal Stomach	stomach

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