Variant report

Variant	rs10786220
Chromosome Location	chr10:97303809-97303810
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97298258..97302790-chr10:97302901..97306757,8	K562	blood:
2	chr10:97301380..97303820-chr10:97311084..97312595,2	MCF-7	breast:
3	chr10:97302505..97305579-chr10:97311139..97314608,3	K562	blood:
4	chr10:97302819..97305351-chr10:97319883..97321393,2	K562	blood:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10736090	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10786223	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786224	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1326931	1.00[YRI][hapmap]
rs1326933	1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs1326936	0.93[YRI][hapmap]
rs1326937	1.00[YRI][hapmap]
rs1326938	1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs1359723	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1409711	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1409715	1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs1609588	1.00[YRI][hapmap]
rs1887225	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1887227	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1926817	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2031683	1.00[YRI][hapmap]
rs3927490	1.00[YRI][hapmap]
rs4457684	1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs4918942	1.00[YRI][hapmap]
rs4918945	1.00[YRI][hapmap]
rs4918946	1.00[YRI][hapmap]
rs6584008	1.00[YRI][hapmap]
rs7081926	1.00[YRI][hapmap]
rs7092277	0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7098378	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7098531	0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7894499	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7896622	0.82[EUR][1000 genomes]
rs7909386	0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7924227	1.00[YRI][hapmap]
rs943339	1.00[YRI][hapmap]
rs943340	1.00[YRI][hapmap]
rs943348	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
2	chr10:97289200-97309000	Enhancers	Left Ventricle	heart
3	chr10:97291800-97308600	Enhancers	Colon Smooth Muscle	Colon
4	chr10:97293400-97305400	Enhancers	Right Atrium	heart
5	chr10:97293400-97306000	Enhancers	Fetal Intestine Large	intestine
6	chr10:97295000-97305200	Enhancers	Stomach Mucosa	stomach
7	chr10:97296200-97306400	Enhancers	Liver	Liver
8	chr10:97296400-97311400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr10:97296800-97312600	Weak transcription	Placenta	Placenta
10	chr10:97298200-97305000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:97298200-97308200	Enhancers	Fetal Muscle Leg	muscle
12	chr10:97298400-97305200	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr10:97298600-97305000	Enhancers	Brain Anterior Caudate	brain
14	chr10:97298800-97305800	Enhancers	Brain Hippocampus Middle	brain
15	chr10:97299000-97307200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:97299400-97304200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:97299400-97305200	Enhancers	Right Ventricle	heart
18	chr10:97300400-97305000	Enhancers	Spleen	Spleen
19	chr10:97300400-97308800	Enhancers	Psoas Muscle	Psoas
20	chr10:97300600-97304200	Enhancers	Gastric	stomach
21	chr10:97300600-97305200	Enhancers	Lung	lung
22	chr10:97300800-97305200	Enhancers	Pancreas	Pancrea
23	chr10:97300800-97307200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr10:97301000-97315200	Enhancers	HepG2	liver
25	chr10:97301400-97304400	Flanking Active TSS	Fetal Heart	heart
26	chr10:97301400-97305800	Enhancers	Brain Angular Gyrus	brain
27	chr10:97301400-97306600	Enhancers	Brain Cingulate Gyrus	brain
28	chr10:97301800-97304000	Weak transcription	Fetal Brain Female	brain
29	chr10:97301800-97304000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr10:97301800-97311000	Weak transcription	Colonic Mucosa	Colon
31	chr10:97302200-97305200	Enhancers	Fetal Intestine Small	intestine
32	chr10:97302600-97304200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr10:97302600-97304800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:97302800-97304200	Weak transcription	Fetal Stomach	stomach
35	chr10:97302800-97304400	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr10:97302800-97305000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:97302800-97305000	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr10:97302800-97305000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr10:97303000-97306800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr10:97303000-97309600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr10:97303200-97304200	Weak transcription	Fetal Brain Male	brain
42	chr10:97303200-97304400	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr10:97303200-97304600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:97303200-97306800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr10:97303400-97304200	Enhancers	Fetal Lung	lung
46	chr10:97303400-97304800	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr10:97303400-97305400	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr10:97303400-97305600	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr10:97303600-97304000	Enhancers	Aorta	Aorta
50	chr10:97303600-97304200	Enhancers	Ovary	ovary

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