Variant report

Variant	rs943340
Chromosome Location	chr10:97292832-97292833
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97292805..97294377-chr10:97295595..97297617,2	K562	blood:
2	chr10:97292035..97293722-chr10:97302086..97303727,2	K562	blood:
3	chr10:97290965..97293136-chr10:97317143..97318856,2	K562	blood:
4	chr10:97272650..97274953-chr10:97291349..97294026,2	K562	blood:
5	chr10:97290800..97293543-chr10:97293667..97298455,5	K562	blood:
6	chr10:97282540..97285200-chr10:97291326..97293754,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10736089	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10786216	0.93[ASN][1000 genomes]
rs10786220	1.00[YRI][hapmap]
rs10786223	1.00[YRI][hapmap]
rs1326931	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1326933	0.80[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1326935	1.00[JPT][hapmap]
rs1326936	0.82[CEU][hapmap];0.93[YRI][hapmap]
rs1326937	0.80[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1326938	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1326939	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1359723	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1359724	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1409708	1.00[JPT][hapmap]
rs1409715	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1536441	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1536447	0.80[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1571132	0.90[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1609588	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1819287	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1926817	1.00[YRI][hapmap]
rs2031683	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3927490	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4457684	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4466758	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4498913	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4592368	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4617517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4638246	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4918942	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4918945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6584005	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6584006	0.93[ASN][1000 genomes]
rs6584008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081926	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7896622	0.82[EUR][1000 genomes]
rs7904778	0.93[ASN][1000 genomes]
rs7910345	0.93[ASN][1000 genomes]
rs7912249	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7915173	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7921696	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7924227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943348	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97278000-97294000	Weak transcription	Esophagus	oesophagus
2	chr10:97279200-97293200	Weak transcription	Fetal Lung	lung
3	chr10:97280800-97301400	Enhancers	Fetal Heart	heart
4	chr10:97281600-97296400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:97281800-97295000	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
7	chr10:97283200-97296400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:97286200-97294800	Weak transcription	Small Intestine	intestine
9	chr10:97286200-97296000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:97286800-97293200	Weak transcription	Liver	Liver
11	chr10:97288800-97293600	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr10:97288800-97294400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:97289000-97294800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:97289000-97295000	Enhancers	Right Ventricle	heart
15	chr10:97289200-97299200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:97289200-97309000	Enhancers	Left Ventricle	heart
17	chr10:97289400-97296200	Weak transcription	HSMMtube	muscle
18	chr10:97289400-97303800	Weak transcription	HSMM	muscle
19	chr10:97289800-97293800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr10:97290000-97298600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr10:97290000-97301400	Enhancers	Rectal Smooth Muscle	rectum
22	chr10:97290400-97293000	Enhancers	Spleen	Spleen
23	chr10:97290400-97294200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr10:97290400-97298800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr10:97290600-97294200	Enhancers	Fetal Muscle Leg	muscle
26	chr10:97290600-97301800	Weak transcription	Ovary	ovary
27	chr10:97290800-97293800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:97291000-97293200	Weak transcription	Psoas Muscle	Psoas
29	chr10:97291000-97293400	Genic enhancers	HepG2	liver
30	chr10:97291000-97295600	Weak transcription	Brain Hippocampus Middle	brain
31	chr10:97291200-97297200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr10:97291200-97301000	Weak transcription	Fetal Brain Female	brain
33	chr10:97291400-97293600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr10:97291600-97293000	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr10:97291600-97295000	Enhancers	Gastric	stomach
36	chr10:97291800-97296600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:97291800-97308600	Enhancers	Colon Smooth Muscle	Colon
38	chr10:97292000-97293000	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr10:97292000-97293200	Weak transcription	Adipose Nuclei	Adipose
40	chr10:97292000-97293800	Enhancers	Primary hematopoietic stem cells	blood
41	chr10:97292000-97293800	Enhancers	Brain Angular Gyrus	brain
42	chr10:97292000-97295800	Weak transcription	Placenta	Placenta
43	chr10:97292000-97298400	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr10:97292200-97293000	Enhancers	H9 Cell Line	embryonic stem cell
45	chr10:97292200-97293200	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr10:97292200-97293400	Weak transcription	Fetal Muscle Trunk	muscle
47	chr10:97292200-97299600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:97292400-97293000	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr10:97292400-97293200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr10:97292400-97293200	Weak transcription	Fetal Stomach	stomach

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