Variant report

Variant	rs10736089
Chromosome Location	chr10:97279234-97279235
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97271514..97273430-chr10:97278974..97280871,3	K562	blood:
2	chr10:97277519..97280426-chr10:97289369..97291949,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10786216	1.00[ASN][1000 genomes]
rs1326931	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1326933	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1326935	1.00[CHD][hapmap];0.96[GIH][hapmap]
rs1326937	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1326938	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1326939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1359723	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1359724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409708	1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1409715	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1536441	1.00[JPT][hapmap]
rs1536447	1.00[CHD][hapmap];0.88[GIH][hapmap];0.86[ASN][1000 genomes]
rs1571132	1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1609588	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1819287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2031683	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3927490	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4244315	0.83[GIH][hapmap]
rs4457684	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4466758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4498913	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4592368	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4617517	0.93[ASN][1000 genomes]
rs4638246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918942	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4918945	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4918946	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6584005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6584006	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6584008	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7081926	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7904778	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910345	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912249	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915173	0.93[ASN][1000 genomes]
rs7921696	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924227	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs943339	1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs943340	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs943348	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10736089	IDE	cis	cerebellum	SCAN
rs10736089	KIF11	cis	parietal	SCAN
rs10736089	CRTAC1	cis	cerebellum	SCAN

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97269000-97282600	Weak transcription	Fetal Kidney	kidney
2	chr10:97270600-97283400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:97271000-97281200	Enhancers	Right Ventricle	heart
4	chr10:97271400-97279800	Enhancers	Fetal Muscle Leg	muscle
5	chr10:97271400-97279800	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr10:97271600-97279800	Enhancers	Fetal Heart	heart
7	chr10:97271600-97284600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:97273400-97279800	Enhancers	Colon Smooth Muscle	Colon
9	chr10:97273600-97284000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:97274400-97280400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:97275200-97279800	Enhancers	Brain Anterior Caudate	brain
12	chr10:97275600-97279400	Enhancers	Aorta	Aorta
13	chr10:97275800-97279800	Enhancers	HepG2	liver
14	chr10:97276200-97279400	Enhancers	K562	blood
15	chr10:97276400-97279600	Enhancers	Liver	Liver
16	chr10:97276600-97279600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr10:97276600-97279800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:97276600-97283400	Enhancers	Fetal Brain Male	brain
19	chr10:97276800-97280000	Enhancers	Fetal Stomach	stomach
20	chr10:97277000-97284200	Enhancers	Fetal Brain Female	brain
21	chr10:97277200-97279400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr10:97277200-97279600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr10:97277200-97279800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr10:97277600-97279400	Enhancers	Brain Cingulate Gyrus	brain
25	chr10:97277600-97279400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr10:97277600-97279600	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr10:97277600-97279600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:97277800-97279800	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr10:97277800-97279800	Enhancers	Brain Angular Gyrus	brain
30	chr10:97277800-97280800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:97278000-97284000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr10:97278000-97294000	Weak transcription	Esophagus	oesophagus
33	chr10:97278400-97279400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr10:97278400-97279400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:97278600-97279400	Enhancers	Lung	lung
36	chr10:97278800-97279800	Enhancers	Rectal Smooth Muscle	rectum
37	chr10:97278800-97280400	Weak transcription	Fetal Intestine Small	intestine
38	chr10:97278800-97280800	Weak transcription	Brain Hippocampus Middle	brain
39	chr10:97278800-97282000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr10:97279000-97279800	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr10:97279000-97281800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:97279000-97282000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr10:97279000-97284000	Weak transcription	Psoas Muscle	Psoas
44	chr10:97279000-97284000	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr10:97279200-97279600	Weak transcription	Brain Substantia Nigra	brain
46	chr10:97279200-97279600	Enhancers	Stomach Smooth Muscle	stomach
47	chr10:97279200-97280200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr10:97279200-97280200	Weak transcription	Fetal Intestine Large	intestine
49	chr10:97279200-97280800	Weak transcription	Left Ventricle	heart
50	chr10:97279200-97280800	Weak transcription	Right Atrium	heart

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