Variant report

Variant	rs1359723
Chromosome Location	chr10:97296722-97296723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97289605..97292487-chr10:97295547..97298455,3	K562	blood:
2	chr10:97292805..97294377-chr10:97295595..97297617,2	K562	blood:
3	chr10:97290800..97293543-chr10:97293667..97298455,5	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10736089	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10786220	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10786223	0.89[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10786224	0.87[EUR][1000 genomes]
rs1326931	1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1326933	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1326935	1.00[CHD][hapmap]
rs1326936	0.89[CEU][hapmap];0.92[YRI][hapmap]
rs1326937	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1326938	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1326939	1.00[JPT][hapmap]
rs1359724	1.00[JPT][hapmap]
rs1409708	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1409715	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1536441	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536447	0.89[CEU][hapmap];1.00[CHD][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes]
rs1571132	1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs1609588	1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1819287	1.00[JPT][hapmap]
rs1887225	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1887227	0.85[EUR][1000 genomes]
rs1926817	0.81[CEU][hapmap];0.89[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2031683	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs3927490	1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs4244315	0.83[TSI][hapmap]
rs4457684	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4466758	1.00[JPT][hapmap]
rs4498913	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4592368	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4617517	0.83[AFR][1000 genomes]
rs4638246	1.00[JPT][hapmap]
rs4918942	1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs4918945	1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs4918946	1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs6584002	0.81[EUR][1000 genomes]
rs6584005	1.00[JPT][hapmap]
rs6584006	1.00[CHD][hapmap]
rs6584008	1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7081926	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs7092277	0.81[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs7098378	0.92[EUR][1000 genomes]
rs7098531	0.80[CEU][hapmap];0.92[EUR][1000 genomes]
rs7894499	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7896622	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7909386	0.81[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs7912249	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7921696	1.00[JPT][hapmap]
rs7924227	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs943339	1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs943340	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs943348	1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1359723	TM9SF3	cis	parietal	SCAN
rs1359723	EXOSC1	cis	cerebellum	SCAN
rs1359723	SORBS1	cis	cerebellum	SCAN

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97280800-97301400	Enhancers	Fetal Heart	heart
2	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
3	chr10:97289200-97299200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr10:97289200-97309000	Enhancers	Left Ventricle	heart
5	chr10:97289400-97303800	Weak transcription	HSMM	muscle
6	chr10:97290000-97298600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:97290000-97301400	Enhancers	Rectal Smooth Muscle	rectum
8	chr10:97290400-97298800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:97290600-97301800	Weak transcription	Ovary	ovary
10	chr10:97291200-97297200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr10:97291200-97301000	Weak transcription	Fetal Brain Female	brain
12	chr10:97291800-97308600	Enhancers	Colon Smooth Muscle	Colon
13	chr10:97292000-97298400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr10:97292200-97299600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:97292400-97298600	Enhancers	K562	blood
16	chr10:97292600-97299800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:97292600-97299800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:97292600-97300600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:97293000-97297400	Weak transcription	Pancreas	Pancrea
20	chr10:97293000-97298800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr10:97293000-97299600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr10:97293000-97299800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:97293000-97300400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:97293200-97297400	Enhancers	Fetal Stomach	stomach
25	chr10:97293200-97302800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr10:97293400-97305400	Enhancers	Right Atrium	heart
27	chr10:97293400-97306000	Enhancers	Fetal Intestine Large	intestine
28	chr10:97293600-97299800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr10:97293600-97302000	Weak transcription	Adipose Nuclei	Adipose
30	chr10:97294200-97297600	Enhancers	Brain Cingulate Gyrus	brain
31	chr10:97294400-97299200	Enhancers	Fetal Lung	lung
32	chr10:97294600-97298400	Enhancers	Brain Anterior Caudate	brain
33	chr10:97294800-97297600	Enhancers	Brain Substantia Nigra	brain
34	chr10:97295000-97297400	Weak transcription	Psoas Muscle	Psoas
35	chr10:97295000-97299400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr10:97295000-97305200	Enhancers	Stomach Mucosa	stomach
37	chr10:97295400-97297600	Enhancers	HUVEC	blood vessel
38	chr10:97295600-97297000	Enhancers	Fetal Kidney	kidney
39	chr10:97295600-97297000	Enhancers	Fetal Muscle Leg	muscle
40	chr10:97295600-97298000	Enhancers	Brain Hippocampus Middle	brain
41	chr10:97295800-97296800	Enhancers	Placenta	Placenta
42	chr10:97295800-97297000	Enhancers	Right Ventricle	heart
43	chr10:97295800-97297200	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr10:97295800-97297400	Enhancers	NH-A	brain
45	chr10:97295800-97297800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:97295800-97299000	Enhancers	HepG2	liver
47	chr10:97296000-97297200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:97296000-97299800	Weak transcription	Small Intestine	intestine
49	chr10:97296200-97297000	Enhancers	HSMMtube	muscle
50	chr10:97296200-97297200	Flanking Active TSS	Stomach Smooth Muscle	stomach

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