Variant report

Variant	rs1326938
Chromosome Location	chr10:97273513-97273514
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97272650..97274953-chr10:97291349..97294026,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10736089	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10786216	1.00[ASN][1000 genomes]
rs10786220	1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs10786223	1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs10786224	0.81[EUR][1000 genomes]
rs1326931	0.80[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326933	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1326936	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1326937	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1326939	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1359723	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1359724	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1409708	1.00[JPT][hapmap]
rs1409715	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536441	0.82[CEU][hapmap]
rs1536447	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1571132	0.89[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1609588	1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1819287	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1887225	0.87[EUR][1000 genomes]
rs1926817	1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs2031683	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3927490	0.80[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4244315	0.83[EUR][1000 genomes]
rs4457684	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4466758	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4498913	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4592368	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4617517	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4638246	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4918942	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918945	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4918946	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6584002	0.86[EUR][1000 genomes]
rs6584005	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6584006	1.00[ASN][1000 genomes]
rs6584008	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7081926	0.82[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092277	0.87[EUR][1000 genomes]
rs7098378	0.87[EUR][1000 genomes]
rs7098531	0.87[EUR][1000 genomes]
rs7894499	0.88[EUR][1000 genomes]
rs7896622	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7904778	1.00[ASN][1000 genomes]
rs7909386	0.87[EUR][1000 genomes]
rs7910345	1.00[ASN][1000 genomes]
rs7912249	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7915173	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7921696	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7924227	1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs943339	0.80[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs943340	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs943348	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97249800-97274000	Weak transcription	Spleen	Spleen
2	chr10:97260000-97278400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:97262400-97275000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:97262400-97278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:97266400-97273600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:97267600-97275000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr10:97269000-97277200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:97269000-97282600	Weak transcription	Fetal Kidney	kidney
9	chr10:97269200-97273800	Weak transcription	Adipose Nuclei	Adipose
10	chr10:97269200-97277200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:97269400-97277200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:97269600-97277200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr10:97270200-97274600	Enhancers	HepG2	liver
14	chr10:97270600-97273800	Enhancers	Aorta	Aorta
15	chr10:97270600-97278200	Enhancers	Rectal Smooth Muscle	rectum
16	chr10:97270600-97278600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr10:97270600-97279200	Enhancers	Left Ventricle	heart
18	chr10:97270600-97279200	Enhancers	Right Atrium	heart
19	chr10:97270600-97279200	Enhancers	Stomach Mucosa	stomach
20	chr10:97270600-97283400	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr10:97270800-97275000	Enhancers	Brain Cingulate Gyrus	brain
22	chr10:97270800-97275000	Enhancers	Brain Hippocampus Middle	brain
23	chr10:97270800-97275600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:97270800-97275800	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr10:97271000-97273600	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr10:97271000-97273800	Enhancers	Pancreas	Pancrea
27	chr10:97271000-97274200	Enhancers	Lung	lung
28	chr10:97271000-97274600	Enhancers	Brain Substantia Nigra	brain
29	chr10:97271000-97275200	Enhancers	Brain Angular Gyrus	brain
30	chr10:97271000-97281200	Enhancers	Right Ventricle	heart
31	chr10:97271400-97275000	Enhancers	Liver	Liver
32	chr10:97271400-97275800	Weak transcription	Gastric	stomach
33	chr10:97271400-97279800	Enhancers	Fetal Muscle Leg	muscle
34	chr10:97271400-97279800	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr10:97271600-97279800	Enhancers	Fetal Heart	heart
36	chr10:97271600-97284600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr10:97272000-97274400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:97272000-97275600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr10:97272000-97277400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr10:97272000-97277400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr10:97272200-97273600	Enhancers	Fetal Lung	lung
42	chr10:97272200-97274200	Enhancers	Fetal Intestine Small	intestine
43	chr10:97272200-97275000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:97272200-97275600	Enhancers	Fetal Brain Male	brain
45	chr10:97272200-97276000	Enhancers	Psoas Muscle	Psoas
46	chr10:97272400-97274800	Enhancers	HSMMtube	muscle
47	chr10:97272400-97275000	Enhancers	Brain Germinal Matrix	brain
48	chr10:97272400-97277600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr10:97272600-97274400	Enhancers	Fetal Stomach	stomach
50	chr10:97272800-97274400	Enhancers	Duodenum Mucosa	Duodenum

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