Variant report

Variant	rs4617517
Chromosome Location	chr10:97287008-97287009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97285392..97287477-chr10:97320564..97322914,2	K562	blood:
2	chr10:97284547..97287564-chr10:97299273..97302569,3	K562	blood:
3	chr10:97285880..97288158-chr10:97290360..97291993,2	K562	blood:
4	chr10:97204685..97206327-chr10:97285189..97287313,2	K562	blood:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10736089	0.93[ASN][1000 genomes]
rs10786216	0.93[ASN][1000 genomes]
rs1326931	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1326933	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1326938	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1326939	0.93[ASN][1000 genomes]
rs1359723	0.83[AFR][1000 genomes]
rs1359724	0.93[ASN][1000 genomes]
rs1409715	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1536441	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1536447	0.80[ASN][1000 genomes]
rs1571132	0.87[ASN][1000 genomes]
rs1609588	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1819287	0.93[ASN][1000 genomes]
rs2031683	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3927490	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4457684	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4466758	0.93[ASN][1000 genomes]
rs4498913	0.93[ASN][1000 genomes]
rs4592368	0.93[ASN][1000 genomes]
rs4638246	0.93[ASN][1000 genomes]
rs4918942	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4918945	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918946	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6584005	0.93[ASN][1000 genomes]
rs6584006	0.93[ASN][1000 genomes]
rs6584008	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081926	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7896622	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7904778	0.93[ASN][1000 genomes]
rs7910345	0.93[ASN][1000 genomes]
rs7912249	0.93[ASN][1000 genomes]
rs7915173	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7921696	0.93[ASN][1000 genomes]
rs7924227	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943339	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943348	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97278000-97294000	Weak transcription	Esophagus	oesophagus
2	chr10:97279200-97290400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:97279200-97290400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:97279200-97293200	Weak transcription	Fetal Lung	lung
5	chr10:97279800-97288200	Weak transcription	HepG2	liver
6	chr10:97279800-97290600	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:97280400-97289000	Enhancers	Rectal Smooth Muscle	rectum
8	chr10:97280600-97291000	Enhancers	Colon Smooth Muscle	Colon
9	chr10:97280800-97301400	Enhancers	Fetal Heart	heart
10	chr10:97281600-97289800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:97281600-97296400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:97281800-97295000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
14	chr10:97282400-97288800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:97282400-97292000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:97282400-97292000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:97282800-97287400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:97282800-97288800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr10:97283000-97292000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:97283200-97296400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:97284200-97289000	Weak transcription	Fetal Brain Female	brain
22	chr10:97284200-97289600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr10:97284600-97288200	Enhancers	Left Ventricle	heart
24	chr10:97284600-97289200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr10:97285000-97289200	Weak transcription	Lung	lung
26	chr10:97285000-97289400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr10:97285000-97289600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr10:97285000-97290000	Weak transcription	Brain Substantia Nigra	brain
29	chr10:97285200-97289000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:97285200-97289200	Weak transcription	Brain Angular Gyrus	brain
31	chr10:97285200-97292400	Enhancers	Fetal Intestine Large	intestine
32	chr10:97285400-97287800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr10:97285800-97288400	Enhancers	Psoas Muscle	Psoas
34	chr10:97285800-97288600	Enhancers	K562	blood
35	chr10:97286000-97288800	Weak transcription	Brain Anterior Caudate	brain
36	chr10:97286000-97289200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:97286000-97290800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:97286200-97287400	Weak transcription	Aorta	Aorta
39	chr10:97286200-97288800	Weak transcription	Right Atrium	heart
40	chr10:97286200-97289200	Weak transcription	Brain Hippocampus Middle	brain
41	chr10:97286200-97289400	Weak transcription	Pancreas	Pancrea
42	chr10:97286200-97289800	Weak transcription	Gastric	stomach
43	chr10:97286200-97290400	Weak transcription	Spleen	Spleen
44	chr10:97286200-97294800	Weak transcription	Small Intestine	intestine
45	chr10:97286200-97296000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr10:97286400-97287800	Weak transcription	Fetal Brain Male	brain
47	chr10:97286400-97288600	Weak transcription	Fetal Intestine Small	intestine
48	chr10:97286400-97289000	Weak transcription	Duodenum Mucosa	Duodenum
49	chr10:97286400-97289000	Weak transcription	Right Ventricle	heart
50	chr10:97286400-97289200	Weak transcription	Stomach Mucosa	stomach

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