Variant report

Variant	rs943348
Chromosome Location	chr10:97278258-97278259
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97277519..97280426-chr10:97289369..97291949,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10736089	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10786216	1.00[ASN][1000 genomes]
rs10786220	1.00[YRI][hapmap]
rs10786223	1.00[YRI][hapmap]
rs1326931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326933	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1326936	0.82[CEU][hapmap];0.93[YRI][hapmap]
rs1326937	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1326938	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326939	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1359723	1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs1359724	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1409708	1.00[JPT][hapmap]
rs1409715	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536441	1.00[CEU][hapmap];0.80[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1536447	0.80[CEU][hapmap];0.86[ASN][1000 genomes]
rs1571132	0.90[CEU][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1609588	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1819287	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1926817	1.00[YRI][hapmap]
rs2031683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3927490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4457684	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4466758	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4498913	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4592368	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4617517	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4638246	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4918942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4918946	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6584005	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6584006	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6584008	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7081926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896622	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7904778	1.00[ASN][1000 genomes]
rs7910345	1.00[ASN][1000 genomes]
rs7912249	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7915173	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7921696	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7924227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs943339	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs943340	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97260000-97278400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:97262400-97278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:97269000-97282600	Weak transcription	Fetal Kidney	kidney
4	chr10:97270600-97278600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr10:97270600-97279200	Enhancers	Left Ventricle	heart
6	chr10:97270600-97279200	Enhancers	Right Atrium	heart
7	chr10:97270600-97279200	Enhancers	Stomach Mucosa	stomach
8	chr10:97270600-97283400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:97271000-97281200	Enhancers	Right Ventricle	heart
10	chr10:97271400-97279800	Enhancers	Fetal Muscle Leg	muscle
11	chr10:97271400-97279800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr10:97271600-97279800	Enhancers	Fetal Heart	heart
13	chr10:97271600-97284600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:97272800-97278600	Enhancers	HUVEC	blood vessel
15	chr10:97273400-97279800	Enhancers	Colon Smooth Muscle	Colon
16	chr10:97273600-97284000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:97274200-97278600	Weak transcription	Fetal Lung	lung
18	chr10:97274200-97279200	Enhancers	Pancreas	Pancrea
19	chr10:97274400-97280400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:97275200-97279800	Enhancers	Brain Anterior Caudate	brain
21	chr10:97275600-97279400	Enhancers	Aorta	Aorta
22	chr10:97275800-97278600	Weak transcription	Spleen	Spleen
23	chr10:97275800-97279800	Enhancers	HepG2	liver
24	chr10:97276200-97279400	Enhancers	K562	blood
25	chr10:97276400-97279200	Enhancers	HSMMtube	muscle
26	chr10:97276400-97279600	Enhancers	Liver	Liver
27	chr10:97276600-97279200	Enhancers	Gastric	stomach
28	chr10:97276600-97279600	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr10:97276600-97279800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:97276600-97283400	Enhancers	Fetal Brain Male	brain
31	chr10:97276800-97278800	Enhancers	Fetal Intestine Small	intestine
32	chr10:97276800-97280000	Enhancers	Fetal Stomach	stomach
33	chr10:97277000-97278800	Enhancers	Brain Hippocampus Middle	brain
34	chr10:97277000-97279000	Enhancers	Psoas Muscle	Psoas
35	chr10:97277000-97279000	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr10:97277000-97279200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:97277000-97279200	Enhancers	Brain Germinal Matrix	brain
38	chr10:97277000-97279200	Enhancers	Fetal Intestine Large	intestine
39	chr10:97277000-97284200	Enhancers	Fetal Brain Female	brain
40	chr10:97277200-97278400	Enhancers	NH-A	brain
41	chr10:97277200-97278800	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr10:97277200-97279000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:97277200-97279200	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr10:97277200-97279400	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr10:97277200-97279600	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr10:97277200-97279800	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr10:97277400-97278400	Enhancers	Placenta	Placenta
48	chr10:97277400-97279000	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr10:97277400-97279200	Enhancers	H1 Cell Line	embryonic stem cell
50	chr10:97277400-97279200	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links