Variant report

Variant	rs6584005
Chromosome Location	chr10:97271872-97271873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97255064..97257617-chr10:97271622..97273423,2	K562	blood:
2	chr10:97271514..97273430-chr10:97278974..97280871,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10736089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786216	1.00[ASN][1000 genomes]
rs1326931	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1326933	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1326937	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1326938	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1326939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1359723	1.00[JPT][hapmap]
rs1359724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409708	1.00[JPT][hapmap]
rs1409715	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1536441	1.00[JPT][hapmap]
rs1536447	0.86[ASN][1000 genomes]
rs1571132	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1609588	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1819287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2031683	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3927490	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4457684	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4466758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4498913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4592368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4617517	0.93[ASN][1000 genomes]
rs4638246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918942	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4918945	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4918946	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6584006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6584008	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7081926	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7904778	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910345	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915173	0.93[ASN][1000 genomes]
rs7921696	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924227	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs943339	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs943340	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs943348	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97249800-97274000	Weak transcription	Spleen	Spleen
2	chr10:97256800-97273200	Weak transcription	HSMM	muscle
3	chr10:97260000-97272800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:97260000-97278400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:97260800-97272800	Weak transcription	Esophagus	oesophagus
6	chr10:97262400-97275000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:97262400-97278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:97265200-97272000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:97266400-97272200	Weak transcription	Fetal Brain Male	brain
10	chr10:97266400-97272800	Weak transcription	Fetal Brain Female	brain
11	chr10:97266400-97273600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:97267600-97275000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr10:97268800-97272800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr10:97268800-97273000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:97269000-97272200	Weak transcription	Psoas Muscle	Psoas
16	chr10:97269000-97272200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr10:97269000-97272400	Weak transcription	HSMMtube	muscle
18	chr10:97269000-97272800	Weak transcription	Small Intestine	intestine
19	chr10:97269000-97273000	Weak transcription	Ovary	ovary
20	chr10:97269000-97273000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:97269000-97277200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:97269000-97282600	Weak transcription	Fetal Kidney	kidney
23	chr10:97269200-97272400	Enhancers	Colon Smooth Muscle	Colon
24	chr10:97269200-97272800	Weak transcription	HUVEC	blood vessel
25	chr10:97269200-97273800	Weak transcription	Adipose Nuclei	Adipose
26	chr10:97269200-97277200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:97269400-97272200	Weak transcription	Fetal Intestine Small	intestine
28	chr10:97269400-97272800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr10:97269400-97273000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:97269400-97273000	Weak transcription	Fetal Intestine Large	intestine
31	chr10:97269400-97273200	Weak transcription	NH-A	brain
32	chr10:97269400-97277200	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr10:97269600-97272200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:97269600-97272200	Weak transcription	Fetal Lung	lung
35	chr10:97269600-97273400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:97269600-97277200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr10:97270200-97274600	Enhancers	HepG2	liver
38	chr10:97270600-97272000	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr10:97270600-97272000	Enhancers	K562	blood
40	chr10:97270600-97272200	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr10:97270600-97272800	Enhancers	Brain Anterior Caudate	brain
42	chr10:97270600-97273800	Enhancers	Aorta	Aorta
43	chr10:97270600-97278200	Enhancers	Rectal Smooth Muscle	rectum
44	chr10:97270600-97278600	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr10:97270600-97279200	Enhancers	Left Ventricle	heart
46	chr10:97270600-97279200	Enhancers	Right Atrium	heart
47	chr10:97270600-97279200	Enhancers	Stomach Mucosa	stomach
48	chr10:97270600-97283400	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr10:97270800-97275000	Enhancers	Brain Cingulate Gyrus	brain
50	chr10:97270800-97275000	Enhancers	Brain Hippocampus Middle	brain

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