Variant report

Variant	rs1326935
Chromosome Location	chr10:97260248-97260249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97258694..97260975-chr10:97320638..97323620,2	K562	blood:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10736089	1.00[CHD][hapmap];0.96[GIH][hapmap]
rs1326931	1.00[CHD][hapmap];0.87[GIH][hapmap]
rs1326933	1.00[CHD][hapmap];0.83[GIH][hapmap]
rs1326936	1.00[CHB][hapmap]
rs1359723	1.00[CHD][hapmap]
rs1409708	1.00[CHD][hapmap]
rs1536447	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1571132	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap]
rs1609588	1.00[CHD][hapmap];0.87[GIH][hapmap]
rs3927490	1.00[CHD][hapmap];0.87[GIH][hapmap]
rs4244315	0.87[GIH][hapmap]
rs4498913	1.00[CHD][hapmap];0.96[GIH][hapmap]
rs4592368	1.00[CHD][hapmap];0.96[GIH][hapmap]
rs6584002	0.82[CHB][hapmap];0.85[ASN][1000 genomes]
rs6584006	1.00[CHD][hapmap];0.96[GIH][hapmap]
rs7912249	1.00[CHD][hapmap];0.96[GIH][hapmap]
rs943339	1.00[CHD][hapmap];0.87[GIH][hapmap]
rs943340	1.00[JPT][hapmap]
rs943346	0.82[CHB][hapmap];0.85[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1326935	CPEB3	cis	cerebellum	SCAN
rs1326935	CRTAC1	cis	cerebellum	SCAN
rs1326935	TM9SF3	cis	parietal	SCAN
rs1326935	IDE	cis	cerebellum	SCAN
rs1326935	NOC3L	cis	cerebellum	SCAN

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97239600-97260800	Weak transcription	Brain Germinal Matrix	brain
2	chr10:97241000-97260600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:97241600-97260400	Weak transcription	Fetal Brain Male	brain
4	chr10:97241600-97260600	Weak transcription	Fetal Stomach	stomach
5	chr10:97245400-97264600	Weak transcription	Ovary	ovary
6	chr10:97249400-97261200	Weak transcription	Fetal Brain Female	brain
7	chr10:97249800-97274000	Weak transcription	Spleen	Spleen
8	chr10:97251200-97268200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:97252400-97262000	Weak transcription	Fetal Lung	lung
10	chr10:97253400-97261200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:97254000-97265000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:97254200-97261000	Weak transcription	Stomach Mucosa	stomach
13	chr10:97254400-97260600	Weak transcription	Fetal Intestine Small	intestine
14	chr10:97254400-97261800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr10:97256400-97260800	Enhancers	Colon Smooth Muscle	Colon
16	chr10:97256800-97261400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:97256800-97273200	Weak transcription	HSMM	muscle
18	chr10:97257200-97260600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:97257400-97264800	Weak transcription	Placenta	Placenta
20	chr10:97257600-97260600	Weak transcription	Right Atrium	heart
21	chr10:97257600-97261600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr10:97257600-97268000	Weak transcription	HSMMtube	muscle
23	chr10:97258000-97261000	Weak transcription	Fetal Intestine Large	intestine
24	chr10:97258000-97261200	Enhancers	HepG2	liver
25	chr10:97258000-97261600	Weak transcription	Gastric	stomach
26	chr10:97258200-97264600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr10:97258400-97260600	Weak transcription	K562	blood
28	chr10:97258800-97261000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:97259200-97260600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr10:97259200-97260600	Enhancers	Rectal Smooth Muscle	rectum
31	chr10:97259200-97260800	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr10:97259200-97260800	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr10:97259200-97261800	Enhancers	Lung	lung
34	chr10:97259200-97263000	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr10:97259200-97267200	Enhancers	Liver	Liver
36	chr10:97259400-97260400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:97259400-97260800	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr10:97259400-97261000	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr10:97259400-97261800	Enhancers	H9 Cell Line	embryonic stem cell
40	chr10:97259400-97262600	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr10:97259400-97266400	Enhancers	Brain Angular Gyrus	brain
42	chr10:97259400-97269600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:97259600-97261800	Enhancers	H1 Cell Line	embryonic stem cell
44	chr10:97259600-97262800	Enhancers	Pancreas	Pancrea
45	chr10:97259600-97265400	Enhancers	Brain Cingulate Gyrus	brain
46	chr10:97259600-97265400	Enhancers	Brain Hippocampus Middle	brain
47	chr10:97259800-97260400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:97259800-97261200	Weak transcription	Brain Substantia Nigra	brain
49	chr10:97259800-97261800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr10:97259800-97262000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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