Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10080497	0.83[EUR][1000 genomes]
rs10080987	0.82[EUR][1000 genomes]
rs1021836	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10948855	0.83[EUR][1000 genomes]
rs12194012	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12210299	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1503133	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1910356	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4318881	0.84[EUR][1000 genomes]
rs4712073	0.83[EUR][1000 genomes]
rs4715485	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6459026	0.86[EUR][1000 genomes]
rs6459027	0.86[EUR][1000 genomes]
rs6459029	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6900072	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6916818	0.82[EUR][1000 genomes]
rs6919743	0.80[EUR][1000 genomes]
rs6922968	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6926214	0.83[EUR][1000 genomes]
rs6931473	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6937981	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7746125	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7749110	0.83[EUR][1000 genomes]
rs7752214	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7760890	0.83[EUR][1000 genomes]
rs7762606	0.81[EUR][1000 genomes]
rs7770409	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367591	0.82[EUR][1000 genomes]
rs9370328	0.80[EUR][1000 genomes]
rs9395997	0.82[EUR][1000 genomes]
rs9464146	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54712600-54725000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:54713200-54718200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:54713200-54720800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:54713200-54721000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:54713200-54725600	Weak transcription	Gastric	stomach
6	chr6:54713400-54720800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:54713400-54720800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:54713400-54726400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:54714800-54720400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:54715400-54719400	Weak transcription	HMEC	breast
11	chr6:54715400-54720800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:54715400-54731200	Weak transcription	Hela-S3	cervix
13	chr6:54717000-54720000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:54717200-54718600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
15	chr6:54717200-54719400	Strong transcription	NHEK	skin
16	chr6:54717400-54718600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
17	chr6:54717400-54718800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:54717400-54720400	Weak transcription	Stomach Mucosa	stomach
19	chr6:54717600-54720400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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