Variant report

Variant	rs6459027
Chromosome Location	chr6:54697218-54697219
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:54695865..54698667-chr6:54699652..54702495,2	MCF-7	breast:
2	chr6:54688351..54691007-chr6:54693141..54697889,4	MCF-7	breast:
3	chr6:54696307..54700316-chr6:54709756..54713142,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10080497	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10080987	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1021836	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10948855	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12194012	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12210299	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1503133	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1566753	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1812584	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1910356	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1976537	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1976538	0.88[EUR][1000 genomes]
rs2397168	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2397169	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2397170	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2397171	0.89[EUR][1000 genomes]
rs3929470	0.89[EUR][1000 genomes]
rs4318881	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4516942	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4712073	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4715485	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6459026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459029	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6900072	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6916818	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6919743	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6922968	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6926214	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6931473	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6937981	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7746125	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7749110	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7752214	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7760890	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7762606	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7770409	0.86[EUR][1000 genomes]
rs9349732	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9367591	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9370328	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9395997	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9464145	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9464146	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9464151	0.86[EUR][1000 genomes]
rs9475007	0.81[EUR][1000 genomes]
rs965009	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs973020	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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