Variant report

Variant	rs9367591
Chromosome Location	chr6:54680701-54680702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10080497	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10080987	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1021836	0.80[EUR][1000 genomes]
rs10807481	0.81[ASN][1000 genomes]
rs10948855	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12194012	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12210299	0.83[EUR][1000 genomes]
rs1393777	0.84[ASN][1000 genomes]
rs1503133	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1566753	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1812584	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1910356	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1976537	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1976538	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2397168	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2397169	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2397170	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2397171	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35839415	0.84[ASN][1000 genomes]
rs3929470	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4318881	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4516942	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4712072	0.81[ASN][1000 genomes]
rs4712073	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4712074	0.82[ASN][1000 genomes]
rs4715485	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57506664	0.80[ASN][1000 genomes]
rs6459026	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6459027	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6459029	0.81[EUR][1000 genomes]
rs6900072	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6901946	0.95[ASN][1000 genomes]
rs6916818	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6919743	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6922968	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6926214	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931473	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6934377	0.84[ASN][1000 genomes]
rs6937981	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7738681	0.83[ASN][1000 genomes]
rs7746125	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7749110	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7752214	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7760610	0.83[ASN][1000 genomes]
rs7760890	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761084	0.84[ASN][1000 genomes]
rs7762606	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7770409	0.82[EUR][1000 genomes]
rs9349732	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9349733	0.88[ASN][1000 genomes]
rs9370328	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9395997	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9464145	0.82[EUR][1000 genomes]
rs9464146	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9464151	0.82[EUR][1000 genomes]
rs9475007	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs952188	0.91[ASN][1000 genomes]
rs965009	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs973020	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54679200-54681800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:54679200-54681800	Weak transcription	NHEK	skin

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