Variant report

Variant	rs6901946
Chromosome Location	chr6:54688247-54688248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54682109..54683920-chr6:54686335..54689206,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10080497	0.94[ASN][1000 genomes]
rs10080987	0.94[ASN][1000 genomes]
rs10807479	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10807481	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10948855	0.95[ASN][1000 genomes]
rs12197981	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1393777	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1503151	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1503152	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1604672	0.88[EUR][1000 genomes]
rs35839415	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4712072	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4712073	0.95[ASN][1000 genomes]
rs4712074	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57506664	0.80[ASN][1000 genomes]
rs6901963	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6916818	0.89[ASN][1000 genomes]
rs6919743	0.89[ASN][1000 genomes]
rs6926214	0.95[ASN][1000 genomes]
rs6934377	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7738681	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7749110	0.95[ASN][1000 genomes]
rs7760610	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7760890	0.95[ASN][1000 genomes]
rs7761084	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7762606	0.83[ASN][1000 genomes]
rs9349732	0.86[ASN][1000 genomes]
rs9349733	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9367591	0.95[ASN][1000 genomes]
rs9370328	0.94[ASN][1000 genomes]
rs9395997	0.93[ASN][1000 genomes]
rs9464137	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9475007	0.85[ASN][1000 genomes]
rs9475010	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9475014	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs952188	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54683400-54689600	Weak transcription	Pancreas	Pancrea

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