Variant report

Variant	rs1503151
Chromosome Location	chr6:54671090-54671091
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10807479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10807481	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10948855	0.81[ASN][1000 genomes]
rs12197981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393777	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1503152	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1566753	0.85[JPT][hapmap]
rs1604672	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1812584	0.85[JPT][hapmap]
rs2397169	0.90[JPT][hapmap]
rs2397170	0.85[JPT][hapmap]
rs2397171	0.85[JPT][hapmap]
rs35839415	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4712072	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4712073	0.81[ASN][1000 genomes]
rs4712074	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57506664	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6901946	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6901963	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6916633	0.86[JPT][hapmap]
rs6916818	0.82[ASN][1000 genomes]
rs6919743	0.82[ASN][1000 genomes]
rs6934377	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7738681	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7749110	0.81[ASN][1000 genomes]
rs7760610	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7761084	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7762606	0.86[JPT][hapmap]
rs9349733	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9395997	0.82[ASN][1000 genomes]
rs9464137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464145	0.82[MEX][hapmap]
rs9475001	0.82[CEU][hapmap]
rs9475010	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9475014	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs952188	0.84[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs965009	0.85[JPT][hapmap]
rs973020	0.80[CHD][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1503151	FAR2	trans	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54669000-54671200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:54669800-54673400	Weak transcription	Fetal Intestine Large	intestine
3	chr6:54670600-54674000	Weak transcription	Fetal Heart	heart
4	chr6:54670800-54673400	Weak transcription	Fetal Intestine Small	intestine

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