Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54692258..54695985-chr6:54709264..54713250,6	MCF-7	breast:
2	chr6:54688351..54691007-chr6:54693141..54697889,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10080497	0.82[EUR][1000 genomes]
rs10080987	0.82[EUR][1000 genomes]
rs10948855	0.83[EUR][1000 genomes]
rs12194012	0.83[TSI][hapmap]
rs1393777	0.83[AFR][1000 genomes]
rs1503133	0.83[TSI][hapmap]
rs1566753	0.80[CEU][hapmap];0.81[GIH][hapmap];0.80[TSI][hapmap]
rs1812584	0.80[CEU][hapmap]
rs1910356	0.80[EUR][1000 genomes]
rs2397169	0.80[CEU][hapmap]
rs2397170	0.80[CEU][hapmap]
rs2397171	0.80[CEU][hapmap]
rs4516942	0.80[CEU][hapmap];0.81[GIH][hapmap];0.80[TSI][hapmap]
rs4712073	0.83[EUR][1000 genomes]
rs6459026	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6459027	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6900072	0.80[EUR][1000 genomes]
rs6916633	0.83[CEU][hapmap]
rs6916818	0.82[EUR][1000 genomes]
rs6919743	0.80[EUR][1000 genomes]
rs6926214	0.82[EUR][1000 genomes]
rs6931473	0.81[EUR][1000 genomes]
rs7738681	0.83[AFR][1000 genomes]
rs7746125	0.81[EUR][1000 genomes]
rs7749110	0.83[EUR][1000 genomes]
rs7752214	0.81[GIH][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs7760610	0.81[AFR][1000 genomes]
rs7760890	0.83[EUR][1000 genomes]
rs7762606	0.80[CEU][hapmap];0.88[GIH][hapmap];0.80[TSI][hapmap];0.81[EUR][1000 genomes]
rs9367591	0.82[EUR][1000 genomes]
rs9370328	0.81[EUR][1000 genomes]
rs9395997	0.82[EUR][1000 genomes]
rs9464146	0.81[EUR][1000 genomes]
rs952188	0.87[ASW][hapmap];0.91[LWK][hapmap]
rs965009	0.80[CEU][hapmap]
rs973020	0.84[CEU][hapmap];0.80[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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