Variant report

Variant	rs1393777
Chromosome Location	chr6:54679978-54679979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10080497	0.83[ASN][1000 genomes]
rs10080987	0.83[ASN][1000 genomes]
rs10807479	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10807481	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10948855	0.81[ASN][1000 genomes]
rs12197981	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1503151	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1503152	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1566753	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs1604672	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1812584	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs2397169	0.84[CEU][hapmap];0.90[JPT][hapmap]
rs2397170	0.84[CEU][hapmap];0.86[JPT][hapmap]
rs2397171	0.84[CEU][hapmap];0.86[JPT][hapmap]
rs35839415	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4516942	0.83[CEU][hapmap]
rs4712072	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4712073	0.81[ASN][1000 genomes]
rs4712074	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57506664	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6901946	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6901963	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6916633	0.83[CEU][hapmap];0.86[JPT][hapmap]
rs6926214	0.84[ASN][1000 genomes]
rs6934377	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7749110	0.81[ASN][1000 genomes]
rs7760610	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7760890	0.84[ASN][1000 genomes]
rs7761084	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762606	0.83[CEU][hapmap];0.86[JPT][hapmap]
rs9349733	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9367591	0.84[ASN][1000 genomes]
rs9370328	0.83[ASN][1000 genomes]
rs9464137	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9464145	0.83[AFR][1000 genomes]
rs9475010	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9475014	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs952188	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs965009	0.84[CEU][hapmap];0.86[JPT][hapmap]
rs973020	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54679200-54681800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:54679200-54681800	Weak transcription	NHEK	skin

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