Variant report

Variant	rs9470020
Chromosome Location	chr6:35383957-35383958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35382683..35384184-chr6:35386582..35388142,2	K562	blood:
2	chr6:35310404..35313411-chr6:35381684..35386621,4	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9462082	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv602909	chr6:35356640-35423489	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv470812	chr6:35374461-35418118	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
7	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
8	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
9	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
10	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35361800-35385800	Weak transcription	Small Intestine	intestine
2	chr6:35366200-35386800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:35370600-35393200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:35375600-35387000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:35377600-35386000	Weak transcription	HUVEC	blood vessel
6	chr6:35377800-35385600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:35377800-35395000	Weak transcription	K562	blood
8	chr6:35378000-35386400	Strong transcription	Spleen	Spleen
9	chr6:35378400-35385600	Strong transcription	Fetal Intestine Small	intestine
10	chr6:35378400-35386800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:35378800-35393400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:35379200-35384800	Strong transcription	Thymus	Thymus
13	chr6:35379400-35385000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:35379400-35385200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr6:35379400-35385600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:35379400-35385800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:35379600-35386400	Strong transcription	Primary B cells from peripheral blood	blood
18	chr6:35379800-35392600	Strong transcription	NHEK	skin
19	chr6:35380000-35386600	Strong transcription	Primary B cells from cord blood	blood
20	chr6:35380400-35392200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:35380400-35392200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:35380600-35387200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:35380600-35387600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:35380800-35385800	Weak transcription	Aorta	Aorta
25	chr6:35381000-35389400	Weak transcription	HMEC	breast
26	chr6:35381200-35389600	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr6:35381400-35386400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:35381400-35386800	Weak transcription	GM12878-XiMat	blood
29	chr6:35381800-35384200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:35381800-35385600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr6:35382000-35384200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:35382000-35384400	Enhancers	Liver	Liver
33	chr6:35382000-35384800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:35382200-35384200	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr6:35382800-35386600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:35382800-35390000	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr6:35383000-35384000	Strong transcription	Lung	lung
38	chr6:35383000-35384200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:35383000-35384600	Weak transcription	Psoas Muscle	Psoas
40	chr6:35383000-35384600	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr6:35383000-35385600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:35383000-35385600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr6:35383000-35385800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr6:35383000-35385800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:35383000-35385800	Weak transcription	Colonic Mucosa	Colon
46	chr6:35383000-35386600	Weak transcription	Fetal Lung	lung
47	chr6:35383000-35386600	Weak transcription	Left Ventricle	heart
48	chr6:35383000-35386800	Strong transcription	HSMM	muscle
49	chr6:35383000-35394600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr6:35383000-35396800	Weak transcription	Right Atrium	heart

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