Variant report

Variant	rs9473686
Chromosome Location	chr6:13207104-13207105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13206187..13208549-chr6:13306945..13308625,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16873767	1.00[EUR][1000 genomes]
rs16873768	1.00[EUR][1000 genomes]
rs55753088	1.00[EUR][1000 genomes]
rs56094890	0.94[ASN][1000 genomes]
rs56154949	1.00[EUR][1000 genomes]
rs56173882	1.00[EUR][1000 genomes]
rs56781599	1.00[EUR][1000 genomes]
rs58050056	1.00[EUR][1000 genomes]
rs60715176	1.00[EUR][1000 genomes]
rs6929987	1.00[EUR][1000 genomes]
rs73723203	1.00[EUR][1000 genomes]
rs73723268	1.00[EUR][1000 genomes]
rs73725634	1.00[EUR][1000 genomes]
rs73725652	1.00[EUR][1000 genomes]
rs7747808	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13178800-13217400	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:13182000-13211800	Weak transcription	Fetal Brain Female	brain
3	chr6:13182000-13212000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:13182000-13230000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:13184000-13220800	Weak transcription	Brain Germinal Matrix	brain
6	chr6:13187400-13217400	Weak transcription	Right Atrium	heart
7	chr6:13191800-13210800	Weak transcription	Fetal Heart	heart
8	chr6:13192400-13216800	Weak transcription	Fetal Intestine Small	intestine
9	chr6:13195800-13207400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:13201400-13216200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:13201600-13209000	Weak transcription	Ovary	ovary
12	chr6:13201600-13215600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:13202400-13213200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:13202400-13218400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:13202800-13207800	Strong transcription	Brain Anterior Caudate	brain
16	chr6:13203000-13216800	Weak transcription	Adipose Nuclei	Adipose
17	chr6:13203200-13207800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:13203200-13230200	Weak transcription	Fetal Stomach	stomach
19	chr6:13203600-13217400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:13203800-13209000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:13204000-13207200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr6:13204000-13209000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr6:13204600-13210200	Strong transcription	Stomach Smooth Muscle	stomach
24	chr6:13204800-13208200	Strong transcription	Lung	lung
25	chr6:13205000-13214400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:13205200-13208000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:13205200-13208600	Strong transcription	Left Ventricle	heart
28	chr6:13205400-13217400	Weak transcription	HSMM	muscle
29	chr6:13205800-13207800	Strong transcription	Aorta	Aorta
30	chr6:13205800-13208200	Strong transcription	Pancreas	Pancrea
31	chr6:13205800-13209000	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr6:13206200-13207800	Strong transcription	Brain Hippocampus Middle	brain
33	chr6:13206200-13208600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:13206400-13211800	Weak transcription	Gastric	stomach
35	chr6:13206400-13211800	Weak transcription	Right Ventricle	heart
36	chr6:13206400-13217400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:13206400-13229800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr6:13206400-13230000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr6:13206800-13208600	Strong transcription	Primary hematopoietic stem cells	blood
40	chr6:13207000-13208200	Strong transcription	Brain Substantia Nigra	brain
41	chr6:13207000-13208400	Strong transcription	Brain Cingulate Gyrus	brain

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