Variant report

Variant	rs56173882
Chromosome Location	chr6:13341364-13341365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13335491..13337070-chr6:13341285..13343396,2	MCF-7	breast:
2	chr6:13327503..13331011-chr6:13335452..13341378,7	MCF-7	breast:
3	chr6:13339419..13342239-chr6:13348403..13350162,2	MCF-7	breast:
4	chr6:13340016..13342651-chr6:13343098..13344722,2	K562	blood:

Variant related genes	Relation type
ENSG00000145979	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16873767	1.00[EUR][1000 genomes]
rs16873768	1.00[EUR][1000 genomes]
rs55710269	1.00[AMR][1000 genomes]
rs55753088	1.00[EUR][1000 genomes]
rs56032676	1.00[AMR][1000 genomes]
rs56154949	1.00[EUR][1000 genomes]
rs56781599	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57618556	1.00[AMR][1000 genomes]
rs58050056	1.00[EUR][1000 genomes]
rs58453491	1.00[AMR][1000 genomes]
rs58859488	1.00[AMR][1000 genomes]
rs60507375	1.00[AMR][1000 genomes]
rs60623165	1.00[AMR][1000 genomes]
rs60715176	1.00[EUR][1000 genomes]
rs61020658	1.00[AMR][1000 genomes]
rs6908313	1.00[AMR][1000 genomes]
rs6929987	1.00[EUR][1000 genomes]
rs73362928	1.00[AMR][1000 genomes]
rs73362935	1.00[AMR][1000 genomes]
rs73362973	1.00[AMR][1000 genomes]
rs73723203	1.00[EUR][1000 genomes]
rs73723248	1.00[AMR][1000 genomes]
rs73723251	1.00[AMR][1000 genomes]
rs73723268	1.00[EUR][1000 genomes]
rs73725633	1.00[AMR][1000 genomes]
rs73725634	1.00[EUR][1000 genomes]
rs73725638	1.00[AMR][1000 genomes]
rs73725639	1.00[AMR][1000 genomes]
rs73725645	1.00[AMR][1000 genomes]
rs73725652	1.00[EUR][1000 genomes]
rs7747808	1.00[EUR][1000 genomes]
rs9473686	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1034016	chr6:13248122-13418225	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13329400-13344200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:13335600-13341400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:13335600-13341800	Weak transcription	Right Atrium	heart
4	chr6:13336800-13341600	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:13337200-13351200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:13337400-13341800	Weak transcription	Left Ventricle	heart
7	chr6:13340600-13346000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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