Variant report

Variant	rs73362928
Chromosome Location	chr6:13333361-13333362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13332468..13335306-chr6:13343512..13345394,2	MCF-7	breast:
2	chr6:13328806..13330312-chr6:13333195..13334956,2	K562	blood:
3	chr6:13327431..13330398-chr6:13330885..13335302,6	MCF-7	breast:
4	chr6:13195285..13198115-chr6:13330626..13333611,2	K562	blood:
5	chr6:13332960..13334786-chr6:13338319..13340429,2	K562	blood:
6	chr6:13309961..13312090-chr6:13332724..13334701,2	K562	blood:

Variant related genes	Relation type
ENSG00000145979	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55710269	1.00[AMR][1000 genomes]
rs56032676	1.00[AMR][1000 genomes]
rs56173882	1.00[AMR][1000 genomes]
rs56781599	1.00[AMR][1000 genomes]
rs57618556	1.00[AMR][1000 genomes]
rs58453491	1.00[AMR][1000 genomes]
rs58859488	1.00[AMR][1000 genomes]
rs60507375	1.00[AMR][1000 genomes]
rs60623165	1.00[AMR][1000 genomes]
rs61020658	1.00[AMR][1000 genomes]
rs6908313	1.00[AMR][1000 genomes]
rs73362935	1.00[AMR][1000 genomes]
rs73362973	1.00[AMR][1000 genomes]
rs73723248	1.00[AMR][1000 genomes]
rs73723251	1.00[AMR][1000 genomes]
rs73725633	1.00[AMR][1000 genomes]
rs73725638	1.00[AMR][1000 genomes]
rs73725639	1.00[AMR][1000 genomes]
rs73725645	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1034016	chr6:13248122-13418225	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13329200-13340400	Weak transcription	Spleen	Spleen
2	chr6:13329400-13333600	Enhancers	Fetal Heart	heart
3	chr6:13329400-13336800	Weak transcription	Placenta	Placenta
4	chr6:13329400-13337000	Weak transcription	Psoas Muscle	Psoas
5	chr6:13329400-13344200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:13329600-13334800	Weak transcription	HUVEC	blood vessel
7	chr6:13329600-13335200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:13329600-13335200	Weak transcription	Right Atrium	heart
9	chr6:13329600-13336800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:13329600-13337000	Weak transcription	Brain Anterior Caudate	brain
11	chr6:13329600-13337000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:13329800-13334600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:13329800-13334800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:13329800-13335200	Weak transcription	Fetal Thymus	thymus
15	chr6:13329800-13335200	Weak transcription	Hela-S3	cervix
16	chr6:13329800-13336600	Weak transcription	GM12878-XiMat	blood
17	chr6:13329800-13336800	Weak transcription	Brain Angular Gyrus	brain
18	chr6:13329800-13336800	Weak transcription	Brain Hippocampus Middle	brain
19	chr6:13329800-13337000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:13329800-13337200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:13330000-13334600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:13330000-13335200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:13330000-13337000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr6:13331000-13335200	Weak transcription	Right Ventricle	heart
25	chr6:13331600-13335000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:13331800-13337000	Weak transcription	Left Ventricle	heart
27	chr6:13332600-13333400	Bivalent Enhancer	HepG2	liver
28	chr6:13332600-13335000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr6:13332600-13335200	Weak transcription	HSMM	muscle
30	chr6:13332800-13334800	Weak transcription	K562	blood

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