Variant report

Variant	rs73725645
Chromosome Location	chr6:13258155-13258156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55710269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56032676	1.00[AMR][1000 genomes]
rs56173882	1.00[AMR][1000 genomes]
rs56781599	1.00[AMR][1000 genomes]
rs57618556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58453491	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58859488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60507375	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60623165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61020658	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6908313	1.00[AMR][1000 genomes]
rs73362928	1.00[AMR][1000 genomes]
rs73362935	1.00[AMR][1000 genomes]
rs73362973	1.00[AMR][1000 genomes]
rs73723248	1.00[AMR][1000 genomes]
rs73723251	1.00[AMR][1000 genomes]
rs73725633	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725638	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725639	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1034016	chr6:13248122-13418225	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13234600-13267200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:13248600-13260200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:13248800-13266600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:13249000-13266000	Weak transcription	Fetal Brain Female	brain
5	chr6:13249200-13272200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:13249800-13287000	Weak transcription	Fetal Brain Male	brain
7	chr6:13251000-13259000	Weak transcription	Fetal Heart	heart
8	chr6:13253000-13264200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:13254000-13260200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:13254000-13265400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:13254200-13261200	Weak transcription	Lung	lung
12	chr6:13255800-13260800	Enhancers	Primary B cells from peripheral blood	blood
13	chr6:13256000-13260400	Enhancers	Primary B cells from cord blood	blood
14	chr6:13256400-13266400	Weak transcription	Aorta	Aorta
15	chr6:13256600-13259800	Weak transcription	Brain Germinal Matrix	brain
16	chr6:13256600-13260000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:13256600-13260400	Weak transcription	Spleen	Spleen
18	chr6:13256600-13261200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr6:13256600-13266000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:13256600-13267000	Weak transcription	Fetal Stomach	stomach
21	chr6:13256600-13268800	Weak transcription	Right Ventricle	heart
22	chr6:13256600-13272200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:13256600-13273200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr6:13256600-13278200	Weak transcription	Pancreas	Pancrea
25	chr6:13256800-13262200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:13257000-13259800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:13257000-13261800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:13257400-13259000	Weak transcription	K562	blood
29	chr6:13257400-13259200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr6:13257400-13260000	Weak transcription	Brain Hippocampus Middle	brain
31	chr6:13257400-13263000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr6:13257600-13258400	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr6:13257600-13260200	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr6:13257600-13260600	Weak transcription	Adipose Nuclei	Adipose
35	chr6:13257600-13262200	Weak transcription	Liver	Liver
36	chr6:13257800-13258200	Enhancers	Brain Anterior Caudate	brain
37	chr6:13257800-13258600	Enhancers	GM12878-XiMat	blood
38	chr6:13258000-13258200	Genic enhancers	Primary hematopoietic stem cells	blood
39	chr6:13258000-13258200	Enhancers	Left Ventricle	heart
40	chr6:13258000-13263000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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