Variant report

Variant	rs73362973
Chromosome Location	chr6:13342148-13342149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55710269	1.00[AMR][1000 genomes]
rs56032676	1.00[AMR][1000 genomes]
rs56173882	1.00[AMR][1000 genomes]
rs56781599	1.00[AMR][1000 genomes]
rs57618556	1.00[AMR][1000 genomes]
rs58453491	1.00[AMR][1000 genomes]
rs58859488	1.00[AMR][1000 genomes]
rs60507375	1.00[AMR][1000 genomes]
rs60623165	1.00[AMR][1000 genomes]
rs61020658	1.00[AMR][1000 genomes]
rs6908313	1.00[AMR][1000 genomes]
rs73362928	1.00[AMR][1000 genomes]
rs73362935	1.00[AMR][1000 genomes]
rs73723248	1.00[AMR][1000 genomes]
rs73723251	1.00[AMR][1000 genomes]
rs73725633	1.00[AMR][1000 genomes]
rs73725638	1.00[AMR][1000 genomes]
rs73725639	1.00[AMR][1000 genomes]
rs73725645	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1034016	chr6:13248122-13418225	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13329400-13344200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:13337200-13351200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:13340600-13346000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:13341800-13342200	ZNF genes & repeats	Left Ventricle	heart
5	chr6:13341800-13343000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:13342000-13343000	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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