Variant report

Variant	rs9476709
Chromosome Location	chr6:15017474-15017475
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15014425..15017861-chr6:15018779..15021583,3	K562	blood:
2	chr6:14881770..14884048-chr6:15014899..15017508,2	K562	blood:
3	chr6:14996389..14999164-chr6:15016282..15017980,2	K562	blood:
4	chr6:15016924..15018771-chr6:15065604..15067583,2	K562	blood:
5	chr6:15016604..15018126-chr6:15247080..15249476,2	K562	blood:
6	chr6:15015356..15017558-chr6:15021067..15023495,2	MCF-7	breast:
7	chr6:14920549..14922410-chr6:15017214..15019242,2	K562	blood:
8	chr6:15016833..15018489-chr6:15081774..15084228,2	K562	blood:
9	chr6:15016833..15019664-chr6:15022406..15025151,2	K562	blood:
10	chr6:15016484..15018305-chr6:15062981..15064524,2	K562	blood:
11	chr6:15016388..15019055-chr6:15245142..15248397,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000008083	Chromatin interaction
ENSG00000235488	Chromatin interaction
ENSG00000271888	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs927627	0.94[AFR][1000 genomes]
rs9476707	0.94[AFR][1000 genomes]
rs9476708	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv970723	chr6:14997807-15023765	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv883454	chr6:15009137-15081252	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14986600-15018000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:15009200-15017600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:15009200-15017600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:15009200-15017600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:15013400-15017600	Weak transcription	Small Intestine	intestine
6	chr6:15014000-15017800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:15017000-15019000	Enhancers	Fetal Thymus	thymus
8	chr6:15017000-15019600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:15017200-15017800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:15017200-15017800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:15017200-15017800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:15017200-15017800	Enhancers	Fetal Heart	heart
13	chr6:15017200-15019600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:15017400-15017600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr6:15017400-15017600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr6:15017400-15017600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:15017400-15017600	Enhancers	Primary B cells from cord blood	blood
18	chr6:15017400-15017600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:15017400-15017600	Enhancers	Brain Angular Gyrus	brain
20	chr6:15017400-15017600	Active TSS	Brain Anterior Caudate	brain
21	chr6:15017400-15017600	Active TSS	Brain Cingulate Gyrus	brain
22	chr6:15017400-15017600	Active TSS	Brain Hippocampus Middle	brain
23	chr6:15017400-15017600	Active TSS	Brain Substantia Nigra	brain
24	chr6:15017400-15017600	Enhancers	Fetal Lung	lung
25	chr6:15017400-15017600	Enhancers	Ovary	ovary
26	chr6:15017400-15017600	Active TSS	Right Atrium	heart
27	chr6:15017400-15017600	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr6:15017400-15017800	Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr6:15017400-15017800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:15017400-15017800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:15017400-15017800	Active TSS	Rectal Mucosa Donor 29	rectum
32	chr6:15017400-15017800	Active TSS	NHDF-Ad	bronchial
33	chr6:15017400-15018000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:15017400-15018000	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr6:15017400-15018200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
36	chr6:15017400-15018200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr6:15017400-15018200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
38	chr6:15017400-15018200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
39	chr6:15017400-15018200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:15017400-15018200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr6:15017400-15018400	Enhancers	Thymus	Thymus
42	chr6:15017400-15018400	Flanking Active TSS	K562	blood

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