Variant report

Variant	rs9524315
Chromosome Location	chr13:94683501-94683502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1318496	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1415737	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1415743	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17253537	0.80[EUR][1000 genomes]
rs2021983	0.82[EUR][1000 genomes]
rs72644500	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7994682	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9301921	0.80[EUR][1000 genomes]
rs9301926	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9516322	0.80[EUR][1000 genomes]
rs9516330	0.96[EUR][1000 genomes]
rs9516331	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516332	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524302	0.97[EUR][1000 genomes]
rs9524304	0.94[EUR][1000 genomes]
rs9524309	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9524310	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9524311	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9524312	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9524313	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9524314	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9524316	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9584177	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9584178	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9589878	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs9589880	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9589881	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9589882	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9589883	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9589884	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1052141	chr13:94596760-94689892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv900923	chr13:94641894-94692925	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94678600-94686400	Weak transcription	Fetal Stomach	stomach
2	chr13:94681200-94683600	Weak transcription	Fetal Intestine Large	intestine
3	chr13:94681200-94685200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr13:94681600-94685600	Weak transcription	Brain Germinal Matrix	brain
5	chr13:94681600-94685800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr13:94682000-94685800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr13:94682000-94685800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr13:94682800-94683600	Enhancers	Rectal Smooth Muscle	rectum
9	chr13:94682800-94683800	Enhancers	Fetal Heart	heart
10	chr13:94682800-94685000	Enhancers	Colon Smooth Muscle	Colon
11	chr13:94682800-94685600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr13:94683000-94685800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr13:94683200-94683600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr13:94683200-94683600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
15	chr13:94683200-94683600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
16	chr13:94683200-94683800	Enhancers	Left Ventricle	heart
17	chr13:94683200-94684000	Enhancers	Ovary	ovary
18	chr13:94683200-94684200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr13:94683400-94685000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr13:94683400-94686000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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