Variant report

Variant	rs9589878
Chromosome Location	chr13:94656836-94656837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10492635	1.00[CEU][hapmap]
rs1318496	0.89[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1415736	1.00[CEU][hapmap]
rs1415737	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs1415741	0.97[ASN][1000 genomes]
rs1415742	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1415743	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1556082	1.00[CEU][hapmap];0.82[AFR][1000 genomes]
rs17253537	1.00[CEU][hapmap]
rs2021983	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs3904817	0.96[ASN][1000 genomes]
rs4528446	0.94[ASN][1000 genomes]
rs6492685	0.89[CEU][hapmap]
rs72644500	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7325794	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7994682	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9301921	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9301926	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9516322	0.92[ASN][1000 genomes]
rs9516325	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9516330	0.85[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516331	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs9516332	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9524284	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs9524287	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9524291	0.93[ASN][1000 genomes]
rs9524293	0.90[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs9524297	0.97[ASN][1000 genomes]
rs9524298	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9524299	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9524302	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9524303	0.90[CHB][hapmap];0.92[JPT][hapmap]
rs9524304	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9524305	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9524306	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9524309	1.00[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524311	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9524312	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs9524313	0.88[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9524314	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9524315	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs9524316	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9524317	1.00[CEU][hapmap]
rs9524318	1.00[CEU][hapmap]
rs9524319	1.00[CEU][hapmap]
rs9561490	0.89[CEU][hapmap]
rs9561491	0.89[CEU][hapmap]
rs9584175	0.97[ASN][1000 genomes]
rs9584177	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9584178	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9589880	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9589881	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9589882	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9589883	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9589884	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1052141	chr13:94596760-94689892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv900923	chr13:94641894-94692925	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94654200-94663000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:94654400-94661600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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