Variant report

Variant	rs9524319
Chromosome Location	chr13:94702647-94702648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10492635	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1318496	0.91[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap]
rs1415736	0.91[CEU][hapmap];0.81[CHD][hapmap]
rs1415737	1.00[CEU][hapmap];0.81[CHD][hapmap]
rs1415743	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs1556082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17253537	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933146	0.82[CEU][hapmap]
rs1933147	0.82[CEU][hapmap]
rs2021983	0.91[CEU][hapmap];0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2225228	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2225229	0.91[AMR][1000 genomes]
rs6492685	0.91[CEU][hapmap]
rs6650320	0.82[CEU][hapmap]
rs6650321	0.82[CEU][hapmap]
rs7323264	0.82[CEU][hapmap];0.81[CHD][hapmap]
rs7325794	0.82[CEU][hapmap]
rs7985851	0.82[CEU][hapmap]
rs7994682	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap]
rs928188	1.00[ASW][hapmap]
rs9284276	0.82[CEU][hapmap]
rs9301920	0.82[CEU][hapmap]
rs9301921	0.82[CEU][hapmap]
rs9301926	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.94[GIH][hapmap]
rs9301927	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9301928	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9516323	0.81[CHD][hapmap]
rs9516330	1.00[ASW][hapmap];0.83[GIH][hapmap];0.83[LWK][hapmap]
rs9516331	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs9516334	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9516335	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524284	0.82[CEU][hapmap]
rs9524287	1.00[ASW][hapmap]
rs9524290	0.81[CHD][hapmap]
rs9524292	0.82[CEU][hapmap]
rs9524302	1.00[CEU][hapmap];0.83[GIH][hapmap]
rs9524305	0.91[CEU][hapmap]
rs9524306	1.00[CEU][hapmap]
rs9524309	1.00[CEU][hapmap]
rs9524311	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs9524312	1.00[CEU][hapmap]
rs9524313	1.00[ASW][hapmap];0.90[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.83[AFR][1000 genomes]
rs9524314	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap]
rs9524316	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs9524317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524318	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556348	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9561490	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561491	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584176	0.81[CHB][hapmap]
rs9589877	0.81[CHD][hapmap]
rs9589878	1.00[CEU][hapmap]
rs9589880	0.91[CEU][hapmap];0.89[CHB][hapmap];0.83[AFR][1000 genomes]
rs9589881	0.91[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap]
rs9589882	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs9589883	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv430599	chr13:94699399-94934930	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9524319	CCL23	trans	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94698800-94702800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:94699400-94708600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:94702000-94703000	Enhancers	Liver	Liver
4	chr13:94702200-94702800	Enhancers	HepG2	liver
5	chr13:94702600-94703200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr13:94702600-94703400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:94702600-94703400	Enhancers	Fetal Heart	heart

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