Variant report

Variant	rs9561491
Chromosome Location	chr13:94698547-94698548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10492635	0.91[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1318496	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap]
rs1415736	0.83[CEU][hapmap];0.81[CHD][hapmap]
rs1415737	0.91[CEU][hapmap];0.81[CHD][hapmap];0.80[MEX][hapmap]
rs1415742	0.81[CEU][hapmap];0.82[GIH][hapmap]
rs1415743	0.91[CEU][hapmap];0.89[CHB][hapmap]
rs1556082	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17253537	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2021983	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6492685	1.00[CEU][hapmap]
rs7323264	0.81[CHD][hapmap]
rs7994682	0.91[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap]
rs928188	0.81[CEU][hapmap]
rs9284275	0.81[CEU][hapmap]
rs9301919	0.81[CEU][hapmap]
rs9301926	0.91[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap]
rs9301927	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9301928	0.83[AMR][1000 genomes]
rs9516319	0.81[CEU][hapmap]
rs9516323	0.81[CEU][hapmap];0.81[CHD][hapmap]
rs9516324	0.81[CEU][hapmap]
rs9516325	0.81[CEU][hapmap]
rs9516330	0.86[CEU][hapmap]
rs9516331	0.91[CEU][hapmap];0.83[CHB][hapmap]
rs9516334	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9516335	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524287	0.81[CEU][hapmap]
rs9524290	0.81[CEU][hapmap];0.81[CHD][hapmap]
rs9524293	0.81[CEU][hapmap];0.82[GIH][hapmap]
rs9524298	0.81[CEU][hapmap];0.82[GIH][hapmap]
rs9524299	0.81[CEU][hapmap];0.82[GIH][hapmap]
rs9524300	0.81[CEU][hapmap]
rs9524302	0.91[CEU][hapmap]
rs9524304	0.81[CEU][hapmap]
rs9524305	1.00[CEU][hapmap]
rs9524306	0.91[CEU][hapmap]
rs9524309	1.00[CEU][hapmap]
rs9524311	0.91[CEU][hapmap];0.88[CHB][hapmap]
rs9524312	0.91[CEU][hapmap]
rs9524313	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap]
rs9524314	0.91[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap]
rs9524316	0.85[CHB][hapmap]
rs9524317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524318	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524319	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556348	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9561490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584176	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs9589877	0.81[CEU][hapmap];0.81[CHD][hapmap]
rs9589878	0.89[CEU][hapmap]
rs9589880	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs9589881	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap]
rs9589882	0.91[CEU][hapmap];0.93[CHB][hapmap]
rs9589883	0.91[CEU][hapmap];0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94693600-94698800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:94698200-94698800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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