Variant report

Variant	rs9284275
Chromosome Location	chr13:94616987-94616988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10492635	0.83[CHB][hapmap]
rs1318496	0.81[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.83[TSI][hapmap]
rs1415736	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs1415737	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1415740	0.88[CEU][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1415741	0.92[EUR][1000 genomes]
rs1415742	1.00[CEU][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs1415743	0.89[CHB][hapmap]
rs1832360	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1933145	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1933146	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1933147	0.91[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1933148	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2021983	0.81[CEU][hapmap]
rs2389078	0.84[AMR][1000 genomes]
rs2892675	0.84[AMR][1000 genomes]
rs35534726	0.92[EUR][1000 genomes]
rs3904817	0.93[EUR][1000 genomes]
rs4528446	0.92[EUR][1000 genomes]
rs4771884	0.96[EUR][1000 genomes]
rs4771885	0.83[AMR][1000 genomes]
rs6492685	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs6650320	0.91[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs6650321	0.91[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7323264	0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7325794	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs7327560	0.96[EUR][1000 genomes]
rs7985851	0.91[CEU][hapmap];0.96[EUR][1000 genomes]
rs7994682	0.89[CHB][hapmap];0.90[CHD][hapmap]
rs8000417	0.81[GIH][hapmap];0.82[MEX][hapmap];0.84[AMR][1000 genomes]
rs928188	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9284276	0.91[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9301919	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9301920	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9301921	0.91[CEU][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes]
rs9301926	0.89[CHB][hapmap];0.88[CHD][hapmap]
rs945937	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs945938	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9516319	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9516322	0.94[EUR][1000 genomes]
rs9516323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9516324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9516325	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs9516330	0.82[TSI][hapmap]
rs9516331	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs9524284	0.91[CEU][hapmap];0.96[EUR][1000 genomes]
rs9524287	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9524288	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524290	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9524291	0.96[EUR][1000 genomes]
rs9524292	0.91[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9524293	1.00[CEU][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs9524294	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9524295	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9524297	0.93[EUR][1000 genomes]
rs9524298	1.00[CEU][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs9524299	1.00[CEU][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs9524300	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9524304	0.81[CEU][hapmap]
rs9524305	0.81[CEU][hapmap]
rs9524309	0.85[CEU][hapmap]
rs9524311	0.88[CHB][hapmap]
rs9524312	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs9524313	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs9524314	0.89[CHB][hapmap];0.88[CHD][hapmap]
rs9524316	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs9524318	0.81[CHB][hapmap]
rs9561490	0.81[CEU][hapmap]
rs9561491	0.81[CEU][hapmap]
rs9584175	0.93[EUR][1000 genomes]
rs9584176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9589877	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9589880	0.81[CEU][hapmap];0.89[CHB][hapmap]
rs9589881	0.81[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.83[TSI][hapmap]
rs9589882	0.80[CHB][hapmap]
rs9589883	0.89[CHB][hapmap]
rs9589884	0.87[ASN][1000 genomes]
rs981341	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1052141	chr13:94596760-94689892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9284275	CCL23	trans	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94609200-94618200	Weak transcription	Liver	Liver
2	chr13:94609800-94618000	Weak transcription	Fetal Stomach	stomach
3	chr13:94615000-94620200	Enhancers	HepG2	liver
4	chr13:94615400-94617200	Enhancers	Hela-S3	cervix
5	chr13:94615600-94617000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr13:94615600-94617200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:94616600-94617000	Enhancers	A549	lung
8	chr13:94616600-94617200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr13:94616800-94619600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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