Variant report

Variant	rs928188
Chromosome Location	chr13:94570397-94570398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1318496	0.81[CEU][hapmap];0.83[TSI][hapmap]
rs1415740	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs1415741	0.92[EUR][1000 genomes]
rs1415742	1.00[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs1832360	0.95[EUR][1000 genomes]
rs1933145	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1933146	0.91[CEU][hapmap];0.92[EUR][1000 genomes]
rs1933147	0.91[CEU][hapmap];0.92[EUR][1000 genomes]
rs1933148	1.00[EUR][1000 genomes]
rs2021983	0.81[CEU][hapmap]
rs35534726	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3904817	0.93[EUR][1000 genomes]
rs4528446	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4771884	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6492685	0.81[CEU][hapmap]
rs6650320	0.91[CEU][hapmap]
rs6650321	0.91[CEU][hapmap];0.92[EUR][1000 genomes]
rs7323264	0.91[CEU][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs7325794	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7327560	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7985851	0.91[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9284275	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9284276	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs9301919	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9301920	0.91[CEU][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs9301921	0.91[CEU][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes]
rs9301926	0.82[YRI][hapmap]
rs945937	0.92[EUR][1000 genomes]
rs945938	0.90[EUR][1000 genomes]
rs9516319	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9516322	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9516323	1.00[CEU][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs9516324	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs9516325	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9516330	1.00[ASW][hapmap];0.82[TSI][hapmap]
rs9524284	0.91[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9524287	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9524288	0.95[EUR][1000 genomes]
rs9524290	1.00[CEU][hapmap];0.90[TSI][hapmap];0.96[EUR][1000 genomes]
rs9524291	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9524292	0.91[CEU][hapmap];0.92[EUR][1000 genomes]
rs9524293	1.00[CEU][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9524294	0.92[EUR][1000 genomes]
rs9524295	0.90[EUR][1000 genomes]
rs9524297	0.93[EUR][1000 genomes]
rs9524298	1.00[CEU][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs9524299	1.00[CEU][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs9524300	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9524304	0.81[CEU][hapmap]
rs9524305	0.81[CEU][hapmap]
rs9524309	0.85[CEU][hapmap]
rs9524313	1.00[ASW][hapmap]
rs9524319	1.00[ASW][hapmap]
rs9561490	1.00[ASW][hapmap];0.81[CEU][hapmap]
rs9561491	0.81[CEU][hapmap]
rs9584175	0.93[EUR][1000 genomes]
rs9584176	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs9589877	1.00[CEU][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs9589880	0.81[CEU][hapmap]
rs9589881	0.81[CEU][hapmap];0.83[TSI][hapmap]
rs981341	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv933157	chr13:94565760-94586415	ZNF genes & repeats Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs928188	CCL23	trans	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94561000-94572600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:94568200-94571800	Weak transcription	NH-A	brain
3	chr13:94568400-94571000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:94569000-94573400	Weak transcription	Fetal Stomach	stomach

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