Variant report

Variant	rs4528446
Chromosome Location	chr13:94612412-94612413
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1415740	1.00[EUR][1000 genomes]
rs1415741	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1415742	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1832360	0.96[EUR][1000 genomes]
rs1933145	0.96[EUR][1000 genomes]
rs1933146	1.00[EUR][1000 genomes]
rs1933147	1.00[EUR][1000 genomes]
rs1933148	0.92[EUR][1000 genomes]
rs35534726	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3904817	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4771884	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6650321	1.00[EUR][1000 genomes]
rs72644500	0.93[ASN][1000 genomes]
rs7323264	1.00[EUR][1000 genomes]
rs7325794	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7327560	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7985851	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs928188	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9284275	0.92[EUR][1000 genomes]
rs9284276	0.98[EUR][1000 genomes]
rs9301919	0.96[EUR][1000 genomes]
rs9301920	1.00[EUR][1000 genomes]
rs9301921	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs945937	1.00[EUR][1000 genomes]
rs945938	0.98[EUR][1000 genomes]
rs9516319	0.92[EUR][1000 genomes]
rs9516322	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9516323	0.90[EUR][1000 genomes]
rs9516324	0.90[EUR][1000 genomes]
rs9516325	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9516330	0.94[ASN][1000 genomes]
rs9524284	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9524287	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9524288	0.96[EUR][1000 genomes]
rs9524290	0.93[EUR][1000 genomes]
rs9524291	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9524292	1.00[EUR][1000 genomes]
rs9524293	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9524294	1.00[EUR][1000 genomes]
rs9524295	0.98[EUR][1000 genomes]
rs9524297	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9524298	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9524299	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9524300	0.94[EUR][1000 genomes]
rs9524302	0.97[ASN][1000 genomes]
rs9524304	0.97[ASN][1000 genomes]
rs9524309	0.94[ASN][1000 genomes]
rs9524310	0.94[ASN][1000 genomes]
rs9584175	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9584176	0.90[EUR][1000 genomes]
rs9589877	0.90[EUR][1000 genomes]
rs9589878	0.94[ASN][1000 genomes]
rs981341	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1052141	chr13:94596760-94689892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94609200-94618200	Weak transcription	Liver	Liver
2	chr13:94609800-94618000	Weak transcription	Fetal Stomach	stomach
3	chr13:94610600-94615600	Weak transcription	Fetal Lung	lung
4	chr13:94610800-94615000	Weak transcription	HepG2	liver
5	chr13:94611800-94612800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr13:94612400-94612800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links