Variant report

Variant	rs9589884
Chromosome Location	chr13:94680601-94680602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr13:94680485-94680702	H1-hESC	embryonic stem cell:	n/a	chr13:94680650-94680661 chr13:94680649-94680660 chr13:94680651-94680660
2	CEBPB	chr13:94680565-94680716	HepG2	liver:	n/a	chr13:94680650-94680661 chr13:94680649-94680660 chr13:94680651-94680660
3	CEBPB	chr13:94680393-94680859	HepG2	liver:	n/a	chr13:94680650-94680661 chr13:94680649-94680660 chr13:94680651-94680660
4	REST	chr13:94680572-94681760	H1-neurons	neurons:	n/a	n/a
5	FOXA1	chr13:94680551-94681037	HepG2	liver:	n/a	n/a
6	CEBPB	chr13:94680432-94680713	IMR90	lung:	n/a	chr13:94680650-94680661 chr13:94680649-94680660 chr13:94680651-94680660
7	SMC3	chr13:94680578-94680764	HepG2	liver:	n/a	n/a
8	CEBPB	chr13:94680520-94680802	A549	lung:	n/a	chr13:94680650-94680661 chr13:94680649-94680660 chr13:94680651-94680660

Variant related genes	Relation type
RNA5SP35	TF binding region

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10492635	0.81[EUR][1000 genomes]
rs1318496	0.91[EUR][1000 genomes]
rs1415737	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1415740	0.87[ASN][1000 genomes]
rs1415743	0.95[EUR][1000 genomes]
rs1832360	0.81[ASN][1000 genomes]
rs1933145	0.83[ASN][1000 genomes]
rs1933146	0.87[ASN][1000 genomes]
rs1933147	0.84[ASN][1000 genomes]
rs1933148	0.85[ASN][1000 genomes]
rs6650321	0.85[ASN][1000 genomes]
rs72644500	0.91[EUR][1000 genomes]
rs7323264	0.84[ASN][1000 genomes]
rs7994682	0.93[EUR][1000 genomes]
rs9284275	0.87[ASN][1000 genomes]
rs9284276	0.85[ASN][1000 genomes]
rs9301919	0.87[ASN][1000 genomes]
rs9301920	0.87[ASN][1000 genomes]
rs9301926	0.95[EUR][1000 genomes]
rs945937	0.87[ASN][1000 genomes]
rs945938	0.85[ASN][1000 genomes]
rs9516319	0.87[ASN][1000 genomes]
rs9516323	0.89[ASN][1000 genomes]
rs9516324	0.89[ASN][1000 genomes]
rs9516330	0.91[EUR][1000 genomes]
rs9516331	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9516332	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9524288	0.87[ASN][1000 genomes]
rs9524290	0.87[ASN][1000 genomes]
rs9524292	0.85[ASN][1000 genomes]
rs9524294	0.87[ASN][1000 genomes]
rs9524295	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9524300	0.89[ASN][1000 genomes]
rs9524302	0.92[EUR][1000 genomes]
rs9524304	0.89[EUR][1000 genomes]
rs9524309	0.95[EUR][1000 genomes]
rs9524310	0.95[EUR][1000 genomes]
rs9524311	0.95[EUR][1000 genomes]
rs9524312	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9524313	0.95[EUR][1000 genomes]
rs9524314	0.95[EUR][1000 genomes]
rs9524315	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9524316	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9584176	0.89[ASN][1000 genomes]
rs9584177	0.95[EUR][1000 genomes]
rs9584178	0.95[EUR][1000 genomes]
rs9589877	0.89[ASN][1000 genomes]
rs9589878	0.94[EUR][1000 genomes]
rs9589880	0.91[EUR][1000 genomes]
rs9589881	0.91[EUR][1000 genomes]
rs9589882	0.95[EUR][1000 genomes]
rs9589883	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1052141	chr13:94596760-94689892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv900923	chr13:94641894-94692925	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94675000-94683400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:94678600-94686400	Weak transcription	Fetal Stomach	stomach
3	chr13:94679800-94681600	Enhancers	Colon Smooth Muscle	Colon
4	chr13:94680000-94681200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:94680000-94681200	Enhancers	Ovary	ovary
6	chr13:94680000-94682000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr13:94680400-94681400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr13:94680400-94681600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr13:94680400-94682000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr13:94680600-94681400	Enhancers	Brain Hippocampus Middle	brain
11	chr13:94680600-94681600	Enhancers	Brain Germinal Matrix	brain

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